RNA id: CI01000340_11005204_11007357.mRNA



Basic Information


Item Value
RNA id CI01000340_11005204_11007357.mRNA
length 2997
RNA type mRNA
GC content 0.43
exon number 1
gene id CI01000340_11005204_11007357
representative True

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 11004438 ~ 11007434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGAATCTCACCTCACCATCTCTTTGGTGCTATAGGAATTCCAGCTCAGATCTGATAAGATAAACAAATACAATCAGAATGGCAAGAGGGACTTTCTTTTTTGTTGTGCAGGGCCAGATTTGTTTCTTCCTGTTTTTGGCTTTACTTGGCCTCTCTTCAGTTCAGAGTACAGAATGTCCGCAGCTTTGTGTGTGTGAGATCCGGCCTTGGTTCACACCCCAGTCCACCTACAGAGAAGCAACTACTGTTGATTGCAATGACCTTCACCTTACGCGCATCCCTGGGAACCTGTCCGCTGACACGCAGGTGTTGCTTCTGCAAAGTAACTACATTGCCAGAACTAGTGAGGAACTGGAGCAGTTACTGAATCTCACAGAACTTGACCTGTCTCAGAACAATTTCAGCAACATCCGTGATATCGGCCTGACCAACATGTCACAACTCACAACGCTTCACCTGGAGGAAAACCAAATAGTCGAGATGCCTGACTTCAGTTTGCAAGACCTCACCAATCTACAGGAGCTGTACATTAATCACAATCAGATCAGCTCCATTGCACCCAATGCCTTCGCCGGATTGCGTAACCTTCTGAGACTCCATCTGAACTCCAACAGACTCAAGGCCATTGACAGTCGTTGGTTTGAATCAACCCCCAACCTGGAGATCCTGATGATTGGGGAAAATCCTGTGGTCGGCATCCTGGATTTGAACTTCAAACCTCTTACCAACTTGAGAAGCCTGGTCCTCGCAGGAATGGAGCTCACTGATATCCCAGGCAATGCGTTTGTTGGACTAGACAACCTGGAGAGTCTCTCCTTCTATGACAATAAACTAGTTCGGGTGCCACAGACTGCTCTGCAGAAGCTTCCAAACCTGAAATTCCTGGATTTGAACAAAAATCCAATACATAAAATTCAAGAGGGGGACTTTAAGAACATGCTAAGGCTGAAAGAACTTGGCATTAACAACATGGGAGAACTTGTGTCCATTGATCGCTTTGCCCTGGATAACCTCCCAGAGTTGACCAAACTCGAAGCCACCAACAACCCCAAGTTTTCCTACGTGAGCCGTTTAGCATTCCGTGACTTGCCGTCACTAGAGAGTCTAATGCTCAATAACAACGCTCTAAACTCCCTCTACCAGGCTACGGCGGAGTCCCTGCCCAACCTGAGGGAGATCAGTATCCACAGCAACCCGCTGCGCTGCGACTGTGTAATTCAGTGGATGAGCTCAAACAAGACAAACATTCGATTTATGGAGCCTCTTTCCATGTTTTGCGCGATGCCACTTGAGGTTAGAGGTCAGCGTGTGAGAGACGTGCTTTCTCATGAAACTTCAGGCCAGTGTCTGCCCATGATCTCTCACGACACTTTCCCCAATCACCTCAACCTAGACATCGGAATGACGGTAGACCTTGACTGTCGTGCTATGGCCGAACCTGAACCGGAAATATACTGGGTGACCCCATCTGGTAACAAAGTCATGATGGATACAGTGTCCGATAAATACCAACTCAGCAGTGCAGGAACTCTGCGCATATCCCATATTCAGGTGGACGACTCTGGCCACTACACCTGTGTGGCCCAAAATACAGAAGGAGCGGACACTCGGGTGACCGCCATTCGAGTCAATGGAACTCTTCTGGATAGCACCCAACTTATGAAGATCTATGTGAAACAAACCGAGTCCCACTCAATTTTAGTGTCCTGGAAAGTGAACTCCAATGTCATGACGTCCAATCTAAAGTGGTCGTCTGCCACCATGAAAATTGACAACCCTCACATCACCTATACAGCTAAAGTTCCTGTAGATGTTCATGAGTACAACCTCACACACCTTCAACCAGCCACTGAGTATGAGGTCTGTCTCTCAGTCTCCAATATCCACCAGCAGACCCAAAAGTCATGCGTCAACGTCACAACCAAGCACGCCACGTTTGCAGTGGAAATCTCAGAGCAAGGCACCAATACGGCTCTGGCAGGTGTCATGGGCACAATACTGGCCATCATCAGCCTAGGCTCCATCACGGTGTACATTGCAAAGAGATGGAAGAGGAAGAACTACCATCACTCCTTAAAGAAGTACATGCAGAAAACCTCCTCCATCCCCCTAAACGAACTGTATCCTCCCCTCATTAACTTATGGGAGGCAGACAGTGAAAAGGACAAGGACGGTTCTTCAGACACTAAGCCAACACAGGTGGACACAACAAGAAGTTATTACATGTGGTGAAGCTTACCAGACGTTTTTTCTTCTTTAGAGCACAAAGACACATCTTTACTTATTTGTGCGTAAAAAGACATGGATTTCTTTTTTTTCTGCTTTGCTTACTTGCAAGCAACTATTCAGACTGATATCTCTGACTTTTTAGTAGAGTGTATTGCCTTTTCATCTTCTTTAACTTTCAATATGGCAGCTTTGTTTAGCTTCCGAGACATGTTAGTAGCTGTGCTTTTTCTTTTTGTTCATTATATTTTCATAGCACAGCATAGATAATGTCAAGGATTGACTTTGGGTCGATTGATGCTGTAGTACTGTATCTGATCCAATATTGATATGTCTTTGGCAGTATTCATAGAGAATGCATTGTTTCTTTCTCTCTTGCGTAAGACAGTTTAACTGTTGTGCACTGAAATATATTAACAAATTTGTCTTTGGACTCCAGTGTAAGCTGACAAGGTGAGTTTAGACTTGATACACTGTCTATTGAAAAATGTTAGCAATTGTTCTGTAATGTTGTATCAACTATAATTTGAACATTTTGGGTTTTCTCAAAAGTAATTTTTGATTTAGAACTAAACTTTGCAGATTAAAGAATTGTAAACCAGCAATAGAAATGTGAATGTTAAATAATTAGGTTGTAGAAAAATGCTTTTTTTAATTACTCAGATTCTTCTTCTTTTTTTTTTTTAATTGGCTAGAATCTGTTAATCATTTAATTTTGTTGTAATTTACACATGCAAAATATGTTGCATATTACAGTGCAAACAAAAATAAA

Function


GO:

id name namespace
GO:0007409 axonogenesis biological_process

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU565002 lncRNA downstream 44374 10959813 ~ 10960064 (-) True G492586
TU564960 lncRNA downstream 87771 10915322 ~ 10916667 (-) True G492551
TU564806 lncRNA downstream 143738 10860431 ~ 10860700 (-) True G492400
TU564798 lncRNA downstream 162768 10841453 ~ 10841670 (-) True G492392
TU564791 lncRNA downstream 178018 10826199 ~ 10826420 (-) True G492385
TU565016 lncRNA upstream 17498 11024932 ~ 11025149 (-) True G492600
TU565019 lncRNA upstream 22030 11029464 ~ 11029680 (-) True G492603
TU565038 lncRNA upstream 50848 11058282 ~ 11058772 (-) True G492619
TU565060 lncRNA upstream 70202 11077636 ~ 11077841 (-) True G492630
TU565055 lncRNA upstream 89220 11096654 ~ 11099325 (-) True G492627
CI01000340_10980323_10984372.mRNA mRNA downstream 20066 10980086 ~ 10984372 (-) True CI01000340_10980323_10984372
CI01000340_10962027_10966453.mRNA mRNA downstream 37078 10961724 ~ 10967360 (-) True CI01000340_10962027_10966453
CI01000340_10951922_10954429.mRNA mRNA downstream 50002 10951834 ~ 10954436 (-) True CI01000340_10951922_10954429
CI01000340_10935675_10941448.mRNA mRNA downstream 62757 10935332 ~ 10941681 (-) True CI01000340_10935675_10941448
CI01000340_10924696_10934000.mRNA mRNA downstream 70438 10924384 ~ 10934000 (-) True CI01000340_10924696_10934000
CI01000340_11086607_11088953.mRNA mRNA upstream 78725 11086159 ~ 11089394 (-) True CI01000340_11086607_11088953
CI01000340_11092046_11095664.mRNA mRNA upstream 83861 11091295 ~ 11095664 (-) True CI01000340_11092046_11095664
CI01000340_11107554_11132757.mRNA mRNA upstream 100061 11107495 ~ 11132757 (-) True CI01000340_11107554_11132757
CI01000340_11185627_11192539.mRNA mRNA upstream 176670 11184104 ~ 11192539 (-) True CI01000340_11185627_11192539
CI01000340_11219006_11225062.mRNA mRNA upstream 211140 11218574 ~ 11225062 (-) True CI01000340_11219006_11225062
TU564413 other downstream 642034 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 976455 10021892 ~ 10027983 (-) True G491883
TU564040 other downstream 2204861 8799201 ~ 8799577 (-) True G491712
TU561564 other downstream 4677066 6320457 ~ 6327372 (-) True G489511
TU561569 other downstream 4783796 6183290 ~ 6220642 (-) True G489516
TU565620 other upstream 666312 11673746 ~ 11677994 (-) True G493109
TU565796 other upstream 1059743 12067177 ~ 12106251 (-) False G493266
TU565795 other upstream 1101559 12108993 ~ 12116900 (-) True G493266
TU566559 other upstream 1604782 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 3205914 14213348 ~ 14320277 (-) True G494710

Expression Profile


CI01000340_11005204_11007357.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

CI01000340_11005204_11007357.mRNA Expression in each Bioproject

Bar chart with 41 bars.
CI01000340_11005204_11007357.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064327 True 3497 mRNA 0.44 2 NC_007117.7 43076516 ~ 43092175 (-)
bowfin (Amia calva) AMCG00017076 True 2151 mRNA 0.48 1 CM030122.1 43544654 ~ 43546804 (+)