RNA id: CI01000340_12562841_12563343.mRNA


Basic Information

Item Value
RNA id CI01000340_12562841_12563343.mRNA
length 481
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000340_12562841_12563343
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12562593 ~ 12563343 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGGCTGTAGCGCTTACACTCACAGACCCAGTTCCCAAGAGCATCAGGGTAGCGTTTCACTCATTTGGGCTGTTTGCGTTTATCCAGGGACTCTGTACAGTCATTCTTACCCTGACTGCACCTCAATGTAGGAAGTCTTTGCCTGATCCACAAACTGTTTCCGCATTGGTTAAGAGATACGTGCCTCTGGGGTTGAAAATGAGCCACTGCTGCTGTACAGCCTTTCACTGACACTCAATACAGGTGCATCTATTATTTACATGGTTTCAGTGGTTTTCAGACAGTTGTGAGGTTCTGGTTAAGATGTATTCTATTTAAGGACACACCTTTTCACTAATATTAGCATGCAGGGAAAATGCGTATATACAAATTGTTTTTTAATTTTTATAATAACTCAAACTGTTTACAGTCCTCGATTTTGGGTTGCATTTGAATCCAGACATGTTTGAAAGACATTTTAAAAGAGAAAACAAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566587 lncRNA downstream 113571 12448791 ~ 12449022 (-) True G493956
TU566586 lncRNA downstream 116151 12446243 ~ 12446442 (-) True G493955
TU566544 lncRNA downstream 117876 12444516 ~ 12444717 (-) True G493920
TU566543 lncRNA downstream 118858 12443483 ~ 12443735 (-) True G493919
TU566542 lncRNA downstream 124606 12437758 ~ 12437987 (-) True G493918
TU566621 lncRNA upstream 150284 12713627 ~ 12713979 (-) True G493987
TU566573 lncRNA upstream 196884 12760227 ~ 12760573 (-) True G493942
TU566570 lncRNA upstream 197448 12760791 ~ 12812189 (-) True G493939
TU566640 lncRNA upstream 262323 12825666 ~ 12826157 (-) True G494005
TU566649 lncRNA upstream 338804 12902147 ~ 12902353 (-) True G494014
CI01000340_12532321_12545278.mRNA mRNA downstream 17205 12532239 ~ 12545388 (-) True CI01000340_12532321_12545278
CI01000340_12515377_12519838.mRNA mRNA downstream 42613 12514746 ~ 12519980 (-) True CI01000340_12515377_12519838
CI01000340_11903883_11956886.mRNA mRNA downstream 605707 11903780 ~ 11956886 (-) True CI01000340_11903883_11956886
CI01000340_11779096_11787055.mRNA mRNA downstream 773834 11779091 ~ 11788759 (-) True CI01000340_11779096_11787055
CI01000340_11695434_11705476.mRNA mRNA downstream 856795 11694675 ~ 11705798 (-) True CI01000340_11695434_11705476
CI01000340_12571142_12574655.mRNA mRNA upstream 7678 12571021 ~ 12574678 (-) True CI01000340_12571142_12574655
CI01000340_12577571_12625562.mRNA mRNA upstream 14092 12577435 ~ 12625758 (-) False CI01000340_12577571_12625562
CI01000340_12771982_12782800.mRNA mRNA upstream 208230 12771573 ~ 12782800 (-) True CI01000340_12771982_12782800
CI01000340_12827332_12832015.mRNA mRNA upstream 263939 12827282 ~ 12832626 (-) True CI01000340_12827332_12832015
CI01000340_12846755_12877559.mRNA mRNA upstream 282897 12846240 ~ 12878197 (-) True CI01000340_12846755_12877559
TU565795 other downstream 445693 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 456342 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 884599 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 2200189 10360197 ~ 10362404 (-) True G492045
TU564232 other downstream 2534610 10021892 ~ 10027983 (-) True G491883
TU566559 other upstream 48873 12646587 ~ 12673525 (-) True G493928
TU567402 other upstream 1650005 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 1650005 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 1755022 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1983656 14548727 ~ 14548779 (-) False G494879

Expression Profile