RNA id: CI01000340_13055639_13078780.mRNA


Basic Information

Item Value
RNA id CI01000340_13055639_13078780.mRNA
length 4900
RNA type mRNA
GC content 0.45
exon number 26
gene id CI01000340_13055639_13078780
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13055170 ~ 13078780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGAAAAAAGCCAAGGTTTTAGATCCAACTGCTGCCGGGCAAGGCGGACTGGAAATTCTTCCTCTCAAAAGACAAGGCATCAAAAGGAGATCTAAGGTTCCTGGTGTTATGATTACACAGTACATTGAGGAACTTCCTGAGGGGATGACAACTCCTGACTTCACACGTAAACCCATCGCTTTAACCATTCAAGAAGGAGCTATGCTGGCTTATGAAAAAAAAGAATACTATAGCCCAAATATAGCCTTTAATATTTACCTAATAAAGAATTCAAATTTCAATTTTCATAAAACAGGAAAGCTGGCCATTTTTAAAGCCAAAATGCCTAAAGTCAGTGTTGATGAAGCTGACATTTACAAATGCTACGCCTCAAATGAATATGGGAAGGCTGTTTGCACCGTTGTCCTAAATATCATTGAAGTTGGATTCAAAAAAGACAAAGAAATGCAAAAGGCTGAAGCAGCTGTAACAGGTGACCCAACAGAGTTTAGAAAGATGCTTAGGAAAAGTGCTGGCAAAAAAGAGGAGAAAAGGGAAGGTGACATTGACGAGTCAGTTTGGGAATTGCTGCTGAGTGCTGAGAAGAAAGAATACGAACGCATTTGCTCCGAGTATGGCATCACTGATTTCCGTGGCATGCTGAAGAGACTGGTCGAGATGAAGAAGGAAAGAGAAAAGGAGCAGGCACAGTTCATCCAATATCTCAGTAATCTCAAACCAATTGAGGTGAAGGCTGAGGGTGCTGCTACCTTTGAACTGGAAATGGAGCTCAAAGACCCCAACAGTCGCATTTTTCTGTACAAGGATGGTGTCATGATTCCATTCAGCAAAGAAGCTGAAGGAGAAATGAAACACTATCTAAAACAAGTTGGCAAGAAATATATCTTCACTGTTAAAAACCTCAGTCCAGAAGATGCCGGAATCTATCAAGTGGATGTTGAGGGTGTCAATATCTTTTCAACGGATTTCAAGATTCCCCCTGTGGACTTTGCCCTGAAGATTAAGGAGGTGACGGCCCAAGAAAGAGAGGATGCCATCTTTGAGTGTGTCTTAACTCAGCCCATTAATGAGATTGTTTGGACCCTAAAAAATACACCTCTCTCTAACAATAACAAATATGAGATTACTTCTTCAGAGGATAAACTGATCCACCGTCTGAGAATCATTGATTGTATGCCTTTGGATGCTGGAATCTATGCTGCTCTAGCAGGCATTAAGTCTTGCAGTGCTTGGCTGATTGTAGAAGCCAAAGGTATATCTGGGGCTGAAGCTAAAGCCGCAGCAGATGCAGCGGCACGGGCTGCAGCAGCTAAAGCCAAAGCCGAAGCTGAGGAAGAGGCCAGGAAGCAGGCTGAACTCAAGGCCTTAAGTGAAGGCCTGAGTGCTGAGCAATCTGCTGCAGCAGGCGCTGCGGCAGCTGCTGCAATGGCCGCACAGGCAGCTGCTGCAGCAGCAAGGCTTCAGAAGGCTGGGGGTGGAGTTGGAGGAAACTCAGACACACCCAGCCCAGTTCCAGATGTGAGCAGGGAGCATTGTAAGCAGGAAGGGGAAGCTGCGGGCCGTACCCGTGTAAGACAAGGCCCACTGATACCAGACACAGTGATTGGTGGAGGTAACCCATCAGATAAAGAAACCCCATCAGGGTCTGGCAACCCATCAGGTTCCAGTAATCCATCAGGTTCCAGTAATCCATCAGGTTCCGGTAACCCATCAGGTTCAGGAAACCCATCAGGTTCTGACAACCCTTCAGGTTCCGAAAACCCATCCGGGTCCGGTAGCGCATCAGGTTCTGGGGACCCACCAGGACCCGGGAAGCCACCAGGTCCCGGAGGCCCAACAGGAAGCAGCACTGAAGCTGCAGGGGAAGAAAAAGATGCTGAAGATGAAAAGGATGAGTCAGCTAAAGCTGGAAAGCGTTCAGGCCGTAAAAAACATGGCCTACAGGTTCCGGAGACAGTTGTTGATCCTGGTGTTCACTTTGCTGCTGGGCTGGAAGACTGCAAAGCTATTGTGGGAGAGGCAGCTGAACTAGTCTGCAAACTCAGCAGTGCTGAATGTAAGGGTGTCTGGTCCAAAGATGGCAGCGAGATTACCGACGCCACTGAGGGTATAACCATCAGTAAAGACGGAGTCATTCACAAACTGAAAATTGCCAAAGTATCAGAAGAATTTGCTGGAAAATATCGATTTGAGGCTGATGGGCGTAAAACCGAATGTGTGATTGCAGTTGAAGATCCACCAAGATTCAATGCCAAGGAAATTGAAGTATTTGCAAAACCGACTGTGGTCAAACACAATCAGAAAGCCACCTTTAAAATTCCATTTATTGGCCGTGAGCCATGCAAAGTTCAGTGGTACAAAGATGGTGAAGAGCTCATGCCAGACTCTCACTGCAAGATTGAGATTTCAGAGAGTGAAAGCCGTCTGCTTCTCACCAAATTACAGCGTAAAGACACTGGGGAAATCAAAATCAAAATCAAAAATGAGTTTGGCACAGTGGAAGCCATTTCTAACTTAGTTGTGCTTGATAAGCCTACCCCCCCACTTGGACCTCTGGAGATCATTGAAGCATCTTCCAACTGCATCGAGATCAAGTGGAGACCACCAAAAGACGATGGTGGTTGCCCTATTAAAAATTACATACTTGAACGCAACCAAATTGGACGCAACACATGGAAAAAATTAGGCCAGATCCCAGGTGAAGCCCACTATAAAGACAATGATGTTGACCATGGAAGGAGATACTGCTACCGTATCAGAGCCCAGACTGAAGAAGGCACCAGTGAAATGATGGAGACAGAGGATGTGCAGGCTGGCACTAAAGCATATCCTGGTCCGCCATCTGCTCCTAAAGTAGTCAGTGCCTTCAAAAACTGCATCAACCTGACATGGACTCCCCCGACCACCACTGGAGGAACCAATATTTTGGGTTATAACTTAGAGAAACGCAAGAAGGGCAGCAACTTGTGGAGCCAAGTCAATCCACCAGAGCAGCCAATTCAAGCAAAGAAATATGCTGTAAAAGATGTAGTTGAAGGAATGGAGTACGAGTTCCGTGTCTCTGCCATCAACATATCTGGAGCTGGTGAACCAAGTCACCCCTCAGAATTTGTGTATGCAAGAGATCCAAAAAAACCTCCTGGTAAAGTCATTGACCTTAGAGTGACAGACTCCTCCTACACTACTTTGTCCTTGTCTTGGACTAAACCAAAGGAAACCCCCGGGGTTCAGGATGAGGCCAAGGGGTACTTTGTTGATATCAGGCCTGCTGAGAACCCAGAGTGGGATCGATGCAACTCAAATGCCATCATCATGACCTCCTACACTGTAAAGGGAATGAAATCACTGGCCATGTATTGGGTTAGAGTGATCGCCATCAATGAAGGTGGAGAGGGAGAGCCACAAGAGCTGGACAACTACGTTTTGGCTATGCCTCCTCCAGTGAGACCAAGATTCACAGATACTAAGATCAAGAGTTTCATGGTGGTCAGAGCTGGAAATTCTGCACGACTCAACGTCAACTTTGAGGCTTCCCCTTGGCCTGATGTCATCTGGCTTAAAGATGGTGTCCCTGTGTCCAAACGTGTCACTATTAGCAATGCTGAGGGAGGCTCTCAGATCCTGATCCCATCTGCAGAGCGTTCCGATTCAGGAATCTATACCATCATAGTCAAGAACATTGTGGGGCAAGAGACCTTCAGTGTTGAGATTAGAGTTACAGATGAGCCAAAGCCCCCAGGTCCCGTAGAGTTGGATGAGAATGTTCCGGGCACAGTGACAGTTTCCTGGGAACCATCCCCAGATGAGAAACGCGATGATCGCCTGCATTACACGGTGACCAAGAGAGACTCCAGCAAGAGGACCTGGCACACTGTAGCAGACCGTATCTTCAACAACCGTTACACAGCCTGTAACATCATGCCAGGGAGAGAATACCAGTTCCGTGTGTACTCCAAAAATGACATTGGCCTGTCTGAACATTCGGAGTCACCAAAATGGCTAATCACATGCAAGAAAGAAAAATTCAAGCTGAACATCCCGGAGTCCAAGACCTGCAACTTAGAGAGGCCTCCGAGGTTTATGGTCCCCCTGAAAATCCACACAGCCCCACAAGGCTACGAGTGCTACATGAGCTGTGCCGTGAGGGGCGACCCCACACCCCACGTCACCTGGTACCGCGACAACGTCAGCCTCAACACTAACACCAATTACTTAATAACTAACACCTGTGGAGTGTGCTCCCTGCTCATTCTCAGGGTTGGACCCAAAGACATGGGAGAGTATAAAATCATCGCTGAGAACCCGCTGGGAAGAGCAGAGTGCTCTACCAATCTCACAGTGAGAGGCCCTTTGTGGAACAACAGCATTGAATATTTTTGGAGAAAGATGTGGCTTGTGGAAACGCAATGCACTGCGTGTCCTTATTAGACAAAAAATGGTAGAATCAAATGCATGTGGTAAAACTACATATAGTCTTATTGTGTTTAATAGCACAAAAACCTAAAACTCTATGTGTTGTGCTTCTTGGATGGCTGATGCTTAATACGCCATGCTTTCCTAATCCTGTTTGATAATGATTTTACTTCAGCTTAGCTCAGGTTCGGGGGGTTTTATTATTCTTGTATGGTATTTAATTTATTCATTTATTTATTCTTTTCTTTTGTGTATGTTCCCTGCTCTTTCAAACTTTCACAAATTCAATTATACTGTATTACAGTAAAAAAAAAAGTGTAAAGTGTAGATTGCTCGCATTCATTTAATAACATTCATTAACATTACGTTTTTTCTTTTTTGCATGTATGGAAATGCTAAAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTTTGCTTCAGATATGCTCTATCAACAAAAATGGTTTGGTGTAAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566649 lncRNA downstream 152817 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 229013 12825666 ~ 12826157 (-) True G494005
TU566570 lncRNA downstream 242981 12760791 ~ 12812189 (-) True G493939
TU566573 lncRNA downstream 294597 12760227 ~ 12760573 (-) True G493942
TU566621 lncRNA downstream 341191 12713627 ~ 12713979 (-) True G493987
TU566727 lncRNA upstream 7332 13086112 ~ 13086361 (-) True G494076
TU566749 lncRNA upstream 406017 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA upstream 406376 13485156 ~ 13485714 (-) True G494096
TU566684 lncRNA upstream 602494 13681274 ~ 13684384 (-) True G494045
TU566871 lncRNA upstream 849613 13928393 ~ 13928654 (-) True G494203
CI01000340_13040679_13050661.mRNA mRNA downstream 4509 13040679 ~ 13050661 (-) True CI01000340_13040679_13050661
CI01000340_13012739_13028824.mRNA mRNA downstream 26083 13012410 ~ 13029087 (-) True CI01000340_13012739_13028824
CI01000340_13000573_13007186.mRNA mRNA downstream 47984 12999598 ~ 13007186 (-) True CI01000340_13000573_13007186
CI01000340_12981561_12992400.mRNA mRNA downstream 62770 12981347 ~ 12992400 (-) True CI01000340_12981561_12992400
CI01000340_12975913_12979472.mRNA mRNA downstream 75698 12975886 ~ 12979472 (-) True CI01000340_12975913_12979472
CI01000340_13123870_13230976.mRNA mRNA upstream 45090 13123870 ~ 13230976 (-) True CI01000340_13123870_13230976
CI01000340_13278282_13284505.mRNA mRNA upstream 199355 13278135 ~ 13284802 (-) True CI01000340_13278282_13284505
CI01000340_13333604_13339477.mRNA mRNA upstream 254727 13333507 ~ 13341001 (-) True CI01000340_13333604_13339477
CI01000340_13350921_13376832.mRNA mRNA upstream 272031 13350811 ~ 13377534 (-) True CI01000340_13350921_13376832
CI01000340_13387485_13391568.mRNA mRNA upstream 307549 13386329 ~ 13391568 (-) True CI01000340_13387485_13391568
TU566559 other downstream 381645 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 938270 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 948919 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 1377176 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 2692766 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 1134568 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 1134568 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 1239585 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1468219 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 1468219 14548727 ~ 14555168 (-) True G494879

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064389 True 2290 mRNA 0.42 14 NC_007117.7 46878889 ~ 46941245 (-)