RNA id: CI01000340_13333604_13339477.mRNA


Basic Information

Item Value
RNA id CI01000340_13333604_13339477.mRNA
length 2395
RNA type mRNA
GC content 0.37
exon number 6
gene id CI01000340_13333604_13339477
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13333507 ~ 13341001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACGAGGAGAAAATGGGTGGGGTGCGTGTTTATGAGATAAGAGCTGAGAACATGTTTGGAGTCAGTTTTATATGTCTAACACATTTTTTTCTGACCATTTCATATAATCCTTGAGGGAAAAGAGTTGATTTTATAAAGGTCATTCAGATAAAAAAGGAAGAAAATACTGCTGAATACATTGAAACTATCATGTAAACATGGGTGTGCTTCACAGTTTCATCTGAATTTATTTTACTTTGACTTTCTAGAAAATGATATTAATATCGATGTGTTTTTTTCCGAAGGGTCAGCAGCTGGTTAACTGTGTCCGGGTTCCCTGTTTGAATCATTAAACTCTTTTGTGGTTAAATACACACAGTTACTATAGCAATCAAAACCACGGTTTCTATGGAAATACACACATTGAAGTTAACCATGTGTCACCAAAACACAGCAAGTCAAAAAACAAAACAAAAAAAAAAGTATAAAATAAAAGCTAAAGCTGATATTACCAATTAGACATATGGTAATAATTGCCATAATGGACAGAGGAGGAAAACACCATTGTAACTATAGGCACTGTCAAACATAATCAAATTAAAGCTGGGGAACACCCTTCACTGACTCACACATTCCAGTTCAGTCTGAAGATGGAAAGCGGAGACTGCCTTCAAGACTTCGCCAGACTGGATTCAATTGATGATTTTACATTTTTGTTATTCAAATACATGCACTCTATAGCAACAGCATTTATTTATTAATGCTGTACAATAAATGCTCTTAATCATGTACAGCTTTTGGAAATGTTTTAGTCATTTAGTCAAATATGTCCATGTTCAGAATATATACCACTATTTCTCCAGTATGTGGTAGGCTATGTATACAGTGCATGCATGTTTCTTGTTCGTATGAATACCCAGATACACACCCAAGTTTATTTTTAATGTTCTTCAATGTATATAAAGTTCAAACAGCATTTATTTTAAATATATACTTTTTGCAACATTATAAATGTCTTTACTTCACTTTTGATCAATTTAATGCGTCCTTGCCGAATAAAAATATTAATTTCTTAAAAAAAAATCTTACTGACCCAAACTTTTGAACGGTTGTGTACATAGGCCTACATAAAGTTGGCAAATAAAACCAATATATCATACTGTCAAAAAAGAAATACTTAATGTTTAAAAGTGTATACTAAACAGCCAATTTACTTTTGACAGTGTTTAATCTCGGCAGAAGATTTTGGTGGGAGGACTGGCGTCATAGAATGGGCGTGGTTTTTTTTCTAATATGAGTGAAGGTTTCCTTTCCTATGTTTAGTCGTACACGCGAATCTATGAAACGCCTTTTTTGTCAACTTTTTTTATTTCATTCTTCGGCGAGACCAATTAACTTTTTATCGGGAATATCTTTGTTCGTGTAGTGCTTTTCTGTTATTTCATCTGAATGCCTTCAGCCCGTTAAATTTTCTGTCAGTTGTAGCTATATTCACGACAAGTGTTTAACATTACTGTTTAAAAAGAAAATCTATTTAAGTGACGATGACAAGTGTGAAGGCTTGGCCACTGCTTCTACTGCAGGTTTCTCTAGTCTCTATGGGGAAAGATTGCCCGTTTCCTGTTTTGAATGGCAAAATTATTTTGTCTTCGGAATCCAGACAGAGGAATAAGTTCCCAGATAATTCAAACGTGTTTGTGGAGTGTGTTAGAGGGCACGAGATCGAGGAAGAGAAAGACTGTGGATTACCTAAAGTTTTACCACATATGACCTACTCCATGCCAGATGGAACGTTGTTTGGTGCCCGCATAAAACCCATATGTGAGAGGGGATATGACCTGCAAGGATCAAGTTACATGCATTGTCTTGCATTTGGCTGGAGCGGAAGTCCTAATTGTACTTTGATAATATGTGATGAGCCAGATCCAATTGAACATGGAAAGTTCTCAATGCCCAGGAACATTATTCATTTTGATGATGTCATTGAATATTCCTGCGACGATAACTACACCCTCGTTGGAGACAGATCTATTACATGTGGGCAATATGGGGAATATAGTTCACCACCTCCACAATGCCAAGCTATTGAATGTCGAGTTCCTAAAATTAGTTTAGGTAACCGGACTGAAGGAAATCCTCCGTTCTTTTATAAAAGTGAAGCCACATTTGAATGCTGGCCAGGTTATAGGATGAAAGGTTTAGCTCCATCAGTGTGTGAAGAGAGTGGCTGGTCTGCCCTTCCTGTTTGTGTTGAAGGTAAGCTTAACCTTCTGAATGCAATAATGGATCGGATTTTTTCTCAAGGTGTGGATTCATGATATGAGTGATAAGTAGACAGAATCTGCAGTGTTTCCTGCGCTGATTTCAAGGAAAACTCAACTGAGCTGATGTCAAGGTTGAGGTGGCTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566727 lncRNA downstream 247146 13086112 ~ 13086361 (-) True G494076
TU566649 lncRNA downstream 431154 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 507350 12825666 ~ 12826157 (-) True G494005
TU566570 lncRNA downstream 521318 12760791 ~ 12812189 (-) True G493939
TU566573 lncRNA downstream 572934 12760227 ~ 12760573 (-) True G493942
TU566749 lncRNA upstream 143796 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA upstream 144155 13485156 ~ 13485714 (-) True G494096
TU566684 lncRNA upstream 340273 13681274 ~ 13684384 (-) True G494045
TU566871 lncRNA upstream 587392 13928393 ~ 13928654 (-) True G494203
TU566880 lncRNA upstream 595057 13936058 ~ 13936413 (-) True G494210
CI01000340_13278282_13284505.mRNA mRNA downstream 48705 13278135 ~ 13284802 (-) True CI01000340_13278282_13284505
CI01000340_13123870_13230976.mRNA mRNA downstream 102531 13123870 ~ 13230976 (-) True CI01000340_13123870_13230976
CI01000340_13055639_13078780.mRNA mRNA downstream 254727 13055170 ~ 13078780 (-) True CI01000340_13055639_13078780
CI01000340_13040679_13050661.mRNA mRNA downstream 282846 13040679 ~ 13050661 (-) True CI01000340_13040679_13050661
CI01000340_13012739_13028824.mRNA mRNA downstream 304420 13012410 ~ 13029087 (-) True CI01000340_13012739_13028824
CI01000340_13350921_13376832.mRNA mRNA upstream 9810 13350811 ~ 13377534 (-) True CI01000340_13350921_13376832
CI01000340_13387485_13391568.mRNA mRNA upstream 45328 13386329 ~ 13391568 (-) True CI01000340_13387485_13391568
CI01000340_13457239_13457881.mRNA mRNA upstream 115723 13456724 ~ 13458672 (-) True CI01000340_13457239_13457881
CI01000340_13466556_13478823.mRNA mRNA upstream 125445 13466446 ~ 13480433 (-) True CI01000340_13466556_13478823
CI01000340_13511512_13525933.mRNA mRNA upstream 170511 13511512 ~ 13525933 (-) True CI01000340_13511512_13525933
TU566559 other downstream 659982 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1216607 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1227256 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 1655513 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 2971103 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 872347 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 872347 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 977364 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1205998 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 1205998 14548727 ~ 14555168 (-) True G494879

Expression Profile