RNA id: CI01000340_13457239_13457881.mRNA


Basic Information

Item Value
RNA id CI01000340_13457239_13457881.mRNA
length 1678
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000340_13457239_13457881
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13456724 ~ 13458672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGGCCGCTGTGAGATGTGAGCGCGCGCGCACACGCTTGCTTCATTTGACAAATAGAAGCTGAGCGCAACAGTAGCCGCCGTGACTGGAGATCTGAGAGAGCAACCACCGCGTATGACAGCATCGCAGCGACCATTTGAGGCGATAAAGACATGTTCGACAGGTTTATTTCTCTAGTAGGCTATTTTTAACGGCTCATAATGTGTGTAAAGCTGACGGTTCAGGCATAAGCCAGGAATGAAGACGCGTCAGACGCATCTACTTACTGACTGGGAATCGCGTTTCGAAGACTAACCTGAGCTTCGGCCGTTTGGACAGAAGCGAATATATCCAAGACAGCCGCTTCGGTGGCTCTTTATACCTGTGAGACACTATTTTACTGCTAATTCCCTTTATAGACACGCGTTTTTATCACGCTGTACTGACAGACACGTTTCTCAGTGTGTCAGTCTAGTGCGCTTGATGCTGTGCATGCAAAACCTGAGTGAACTTAACAGGTAAACACAGTTTTACTTCATTCTTGTGTCGATTGTTGTTTACGTTTGATATTATTTTGCATAATGTAGCTATAATAGTATCCTCGCGCATTCGTAAAGGACGTTTTGATGATTTGATTAAATGTTGTCTTGAACTAATAATGGTAGATGAGGCTTATGGAGTTATCACGGGCTGGATGGCGTTCCACATCCGCGCGCTCTCATCCCTACACCGGGTAAAGTGAACGACACACCGGAAAGAAAGGCTTCAAAACCTGTTAACGTGGAACTGCACTGAAACTTAAAGGATAAAGGATGTCTAAAACGCTGAAGAGGAAGAAACACTGGTCCACTAAAGTGCAGGAGTGCGCTGTGTCGTGGGGAAGCGTTGGGGAGTTCGGTGATGTTGTGGAGATCCTCGGAGGCGCCGAGCACGGGGAGTTCCCGTTCCTCGGTCAGATGAACTTGGACGTGCTGGTGTGTCACGTCGGGAGACTACCGTACTACGGGGATGTGTTATTGGAAGTGAACGGGACACCTGTCAGTGGGCTGACGAACCGAGACACGCACGCGGTGATCCGCCACTTTCGGGAGCCGATTCGAATTAAGACTGTCAAACCAGCCCAAACAGTAAAGTGGATGGGGACTTGGGCTATTAGCGACAAACTGTGCAGTATAACCTGGTAGCATAAACCGAGCTTAAACGGATAGTTCACCCCAAAATAATAATAATAATAAATAAATAAATAAATTAAAAAAAATTGGGTACCACTTTACAATAATGTTCGATTTCTTATCTAACATACAACTAAACAAAACACTTATAAACCCTTTATTATTAATTTTAATTTCAACATTCACTTATGCATTATTAAAAGTAAAAGTTGTACCTGTTAATATGATTTAATTAACCTGAGCTAACATGAACTAACAATGAACCATTTTATTTTTAATAACTAACACTTACAAAGATTACTGAATACTGCAACAAATATATTACTCTAGTTAATGTCGTCGGTTAATACATTAGCTAACTTTAACTACTAGAATCTTATTGTAAAGTTTTACAGAAAGTTCTGTAATTATTTACTCATCTTCATGTCAATTAAAACCTGAAATCTTTTCTTCTGTGGAACCCAAAATAAGATCTTTTTAAATGCCTAGGTGTTTTTTTTTTTGTTTGTTTTTTTACATAGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU566727 lncRNA downstream 370363 13086112 ~ 13086361 (-) True G494076
TU566649 lncRNA downstream 554371 12902147 ~ 12902353 (-) True G494014
TU566640 lncRNA downstream 630567 12825666 ~ 12826157 (-) True G494005
TU566570 lncRNA downstream 644535 12760791 ~ 12812189 (-) True G493939
TU566573 lncRNA downstream 696151 12760227 ~ 12760573 (-) True G493942
TU566749 lncRNA upstream 26125 13484797 ~ 13485714 (-) False G494096
TU566748 lncRNA upstream 26484 13485156 ~ 13485714 (-) True G494096
TU566684 lncRNA upstream 222602 13681274 ~ 13684384 (-) True G494045
TU566871 lncRNA upstream 469721 13928393 ~ 13928654 (-) True G494203
TU566880 lncRNA upstream 477386 13936058 ~ 13936413 (-) True G494210
CI01000340_13387485_13391568.mRNA mRNA downstream 65156 13386329 ~ 13391568 (-) True CI01000340_13387485_13391568
CI01000340_13350921_13376832.mRNA mRNA downstream 79190 13350811 ~ 13377534 (-) True CI01000340_13350921_13376832
CI01000340_13333604_13339477.mRNA mRNA downstream 115723 13333507 ~ 13341001 (-) True CI01000340_13333604_13339477
CI01000340_13278282_13284505.mRNA mRNA downstream 171922 13278135 ~ 13284802 (-) True CI01000340_13278282_13284505
CI01000340_13123870_13230976.mRNA mRNA downstream 225748 13123870 ~ 13230976 (-) True CI01000340_13123870_13230976
CI01000340_13466556_13478823.mRNA mRNA upstream 7774 13466446 ~ 13480433 (-) True CI01000340_13466556_13478823
CI01000340_13511512_13525933.mRNA mRNA upstream 52840 13511512 ~ 13525933 (-) True CI01000340_13511512_13525933
CI01000340_13546741_13557286.mRNA mRNA upstream 87075 13545747 ~ 13557341 (-) True CI01000340_13546741_13557286
CI01000340_13604658_13605013.mRNA mRNA upstream 145712 13604384 ~ 13605817 (-) True CI01000340_13604658_13605013
CI01000340_13619069_13627493.mRNA mRNA upstream 159699 13618371 ~ 13627493 (-) True CI01000340_13619069_13627493
TU566559 other downstream 783199 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 1339824 12108993 ~ 12116900 (-) True G493266
TU565796 other downstream 1350473 12067177 ~ 12106251 (-) False G493266
TU565620 other downstream 1778730 11673746 ~ 11677994 (-) True G493109
TU564413 other downstream 3094320 10360197 ~ 10362404 (-) True G492045
TU567402 other upstream 754676 14213348 ~ 14320277 (-) True G494710
TU567403 other upstream 754676 14213348 ~ 14320277 (-) False G494710
TU567401 other upstream 859693 14320240 ~ 14320277 (-) True G494710
TU567585 other upstream 1088327 14548727 ~ 14548779 (-) False G494879
TU567587 other upstream 1088327 14548727 ~ 14555168 (-) True G494879

Expression Profile