RNA id: TCONS_00020464


Basic Information

Item Value
RNA id TCONS_00020464
length 1143
RNA type mRNA
GC content 0.40
exon number 7
gene id XLOC_010407
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5145132 ~ 5154032 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTTCCCCTAGCGTCATTTCCGGTGTGCAGAATTACTACAAGACAACAAAAATGGAAGAGAAAAGCAATCTGGAAGATCTGGACGCTCGTCTTCAGCTTCTCGAAAAACGCGTTTATGGAGAAAGAGGAGGAAAAAACGGCAAACCAGTGAAGTGTGCAGAATCCCTCACCCGGATCAGTGCAGCTCTGGCAAACACTGCCAACAAGAGAGAGCGCGTCAAGATCCTGCACAAGAAGATCGAAGATTTGCTGAAGTATTTGGACCCCCAGTTCACAGACTTCATCGCTGTGCCCGATTCAGTCAAACTGGAGTTTATTCTAGCTGagGAAGAGTTTCTGCGTTCACAAGCCGCATTACTCGAGCAAGTGCAGAATATGCAGCCTCTTCTGGACAGTAACCACATTAAAGCGGTTCCAGAGCTTACTACTAAAGTACAGCGGCTGTCACAAATACACATTCAACAGCAGGACCAGAATGAAGACTTGTCTGCTGAAGTCAAAAGACTCTTTGAAGAGTACAATAAAATGATGTTTCTTCTGTCCAAACAGTTTTCACAGTGGGATGAAACTCTACGAACGCTGGAAGGACCCAAACAAGTCCAGCAGATTGATTAGGACCATAATGATTATGATGTCTTTCACTCTACTGACGCGTTTACTTATTACTGATGAAGAAAACAGCACTGTCATTCCCAAACATGCATTGGTAATGTGTTTAAAGTCCGCATTAAATCAAAATTtgcattgtttattttgttgccACCACATTGTCAGTCTTAAGGTGAACAATGAATCCGTGCAAATTAATccattaaattattttgttttggtaatcttgaatcaaaatctgaccatcTGCTTCTGCTTTGGAACAGCCGCATTTGTATGATGACATCAGGCTGAATCTGATTGGGCAGATCCTACTCAATATACAGCTGCAGTTGGAAATGCttcataaaactgaaataaaacaaatgcagatTTTAGATGTTTTGATGACGTCAGGTTGAATCTGACTCATTTTTGCTCTTCTATTTATTTAGTCCATCTCTTATGATGTGTGTATGAAGATGGCTACACTGCAAAGTTTCTCCTAAAAATACCTTAAGCAATGAAATAAAAGTTCGACTGTACTATATAA

Function

GO:

id name namespace
GO:0045446 endothelial cell differentiation biological_process
GO:0030154 cell differentiation biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048869 cellular developmental process biological_process
GO:0051094 positive regulation of developmental process biological_process
GO:0061640 cytoskeleton-dependent cytokinesis biological_process
GO:0005869 dynactin complex cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko05132 Salmonella infection
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040704-65 Predicted to be involved in cytoskeleton-dependent cytokinesis. Predicted to be part of dynactin complex. Orthologous to human DCTN3 (dynactin subunit 3).

Ensembl:

ensembl_id ENSDART00000060635

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020448 lncRNA downstream 449509 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00022081 lncRNA downstream 586635 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00022080 lncRNA downstream 877396 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00020435 lncRNA downstream 903147 4234727 ~ 4241985 (-) False XLOC_010391
TCONS_00020434 lncRNA downstream 906771 4234727 ~ 4238361 (-) False XLOC_010391
TCONS_00022082 lncRNA upstream 15743 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00022083 lncRNA upstream 15743 5169775 ~ 5173443 (-) True XLOC_010408
TCONS_00022084 lncRNA upstream 299148 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022085 lncRNA upstream 426683 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022086 lncRNA upstream 482254 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00020461 mRNA downstream 1956 5110459 ~ 5143176 (-) False XLOC_010406
TCONS_00020462 mRNA downstream 2008 5110551 ~ 5143124 (-) True XLOC_010406
TCONS_00020460 mRNA downstream 29139 5110455 ~ 5115993 (-) False XLOC_010406
TCONS_00020456 mRNA downstream 39810 5013868 ~ 5105322 (-) False XLOC_010403
TCONS_00020455 mRNA downstream 39810 5013868 ~ 5105322 (-) False XLOC_010403
TCONS_00020467 mRNA upstream 453106 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020468 mRNA upstream 496463 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020469 mRNA upstream 563728 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020470 mRNA upstream 632738 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA upstream 646548 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020459 other downstream 37715 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 83503 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 425747 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 525367 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 617485 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020472 other upstream 667265 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 716541 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 1674520 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 2065960 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 2539849 7693881 ~ 7696211 (-) False XLOC_010438

Expression Profile

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