RNA id: CI01000340_14547725_14551493.mRNA


Basic Information

Item Value
RNA id CI01000340_14547725_14551493.mRNA
length 2221
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000340_14547725_14551493
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14546999 ~ 14552983 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGATCACCATGTATTTTTATTGTATGGAAAAGAGTAGGTTTAACATTTTCATAATAAAATAATGTTCTATAACGACAAAAATGTGCTTGAGAGGCAAGACTGCATAGGATATTAAGATTTTGAATTTTTCTTTTTCCATAAACCATTAGGAAATAGGGTCTTGTTTCTTTAAGCATTATCTTACTATTGACAAATGCCAATGAGGTAAGAAAAATAAACTGAATTCAAAATATTCTCTTAACCAAATCTTAAAAGACTAAAATAGGCCACTGAATAAGAAAATGTATATATATATATATATATATATATATATATATATATAAAATATTTTGCAGTAAATGTAATTATCAAATCCAAAATCTCACAATTTAGGGGAGCCAAAACATGATCCTGGTAATTCATAGTATTTGTACGAGATGGTGAAAACATACTACTTTACATATTTTGCTATTACAATCATTGGCCTTGATGGTTATGTTTTGGTTCGGGTTGTATGCTTTTGCACAACCCAACTGGCACAATTTTCAGTTTCATACAAATAATGAGGGATGGAGGAGCATTAGAGGTAAATCAGAGCTTGTCCAGACCCTGTCGAACCCACATTTACAGCATCTCTTCATTTCAGATGATTCAAAGGTTTCCCAAATCCCCTGACAGCAATGTTCGGCACTCACTCAGTTGACTTTCCCTCTTGCAGCTCCATGGCTTTGATTTTACAAAAGTTTTTCCAAGTCTCTGTCAGCGTCCAGATGAGCAAATGATAGATCTAATTACCTAATGTACTTCCATACTTTGGCATTGAATATGTGAATGTAATGTCACCACCACTGAGCCAGCTAAAAAAACAATAAAAAAAATCAAGACTGACGTGATTGTTTCCTTTTATACATTCGTTTTAAACATATAACAGCATCCACAACTCATTTTAATTCTGTAATGTGACATAATTCAGTATACAGCAATAAAATTCAGGGCTTTATAGAAAACCTTATAAATGTTTTACATTCATCCCAGCAAATATACTTACACGTAAAGCAGTATTGTATCTGTGGGTGGGCTCAGCTATCGCAGCCTAAAGCAGATGGAATCAGCTCATTTCCGTGTTTATCGCACACCATCAGTTCACATTGAATCTATTTGTAACATCTGGGCATTCTCTTTGGAACAATTTTTGGAGAACAATGTTTACCAATACATGATTTTGTTATGAACATTTGATTCAAAGGTCAGAAGGTGAGAGGTCTAAATCAGAAGTAAGAAGTTGCTTAAAACATAACTCTAAGAGAAAACAGGTTTCCAAACAGACAAATGTGATTTTGGGTTTAGTGGACTAACTCCAAACCTCTGAAAAGTAATTAGCGTCATCTGCTGGTCAAAATGTTCTTCCCACTGACTGTCTCACTTTTCAAATGGCCTCTTGATATTGTGCAGAAACTGTTGTTGAAAGTGTTGTGAAATGCATGAAGAGTGTCACTGTATTGAAAACGGATGACGGAGAAAACAAATCCTTTTAAAATGAACATCCAAATGCGTGTTCTTTTGGTAATTTGCTCAGATGATCTTGCAACAATCATACCTGCCCTGAGAGGAAAAACAAAAATCTCAGCAGGGGAGCGGGGAATATCTCAAGCCAGCCACAAAAAGGGAAAACAGGGGGCCTCATTACTCACCAGGACAGGTCAGTTTGTAAATTCCCAACACCGACTCCTGGAGATTACAGTGGGTAGTTTCGGTTTTGAATGCACTGTGAAAGAGGATATAAAGAAAACAGGAGATTGTCAGAAAAAGGAGGTTAAACATGCCTGCTGTGTCACGGTACACACACACATTATTATGGAGGAACAATACAGCTCCAACCAAACAACCATCAGCTTACAAGTCAAAAACCAAACAGATGAACCTCCTGTGCTCATAGTCGCTGCAAGACGCCGAACTCGGTGTGCTGCGATCAGTGCGCCTTCTGCCACTGCCGCCTGTTCAAGACCGTCTGCTACTGCCGCATGGGCTACCCGAAGTGCTGAACACTCTCTGACAGAAGCTATCATGATCAGGATGATCATGTGACTGTCCCTATCTTAAAGGCTTGTTTATAAAACCCTGTGGGATTAAGACAACTGATTATCCATGCACTCTATCATATAATCATGACCAAAATCCGAATTTTCGGAGATTTCCCGGCCTGATATAGCGACAGCTCGTCAGATGCGCCTGGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU567554 lncRNA downstream 4051 14542418 ~ 14543519 (-) True G494855
TU567551 lncRNA downstream 30831 14516516 ~ 14516739 (-) True CI01000340_14515689_14516087
TU567405 lncRNA downstream 31389 14515341 ~ 14516181 (-) False CI01000340_14515689_14516087
TU567413 lncRNA downstream 81642 14464258 ~ 14465928 (-) True G494719
TU567550 lncRNA downstream 100053 14447184 ~ 14447517 (-) True G494852
TU567575 lncRNA upstream 9114 14562097 ~ 14564627 (-) True G494869
TU567611 lncRNA upstream 163308 14716291 ~ 14716574 (-) True G494902
TU567573 lncRNA upstream 190734 14743717 ~ 14745057 (-) True G494867
TU567561 lncRNA upstream 194987 14747970 ~ 14749440 (-) True G494861
TU567552 lncRNA upstream 201900 14754883 ~ 14756719 (-) True G494854
CI01000340_14515689_14516087.mRNA mRNA downstream 31044 14515409 ~ 14516526 (-) False CI01000340_14515689_14516087
CI01000340_14506530_14506877.mRNA mRNA downstream 40693 14506406 ~ 14506877 (-) True CI01000340_14506530_14506877
CI01000340_14467309_14496470.mRNA mRNA downstream 51007 14466969 ~ 14496563 (-) True CI01000340_14467309_14496470
CI01000340_14455602_14462035.mRNA mRNA downstream 83763 14455602 ~ 14463807 (-) True CI01000340_14455602_14462035
CI01000340_14442412_14444888.mRNA mRNA downstream 102660 14441414 ~ 14444910 (-) True CI01000340_14442412_14444888
CI01000340_14576054_14589873.mRNA mRNA upstream 22853 14575836 ~ 14590203 (-) True CI01000340_14576054_14589873
CI01000340_14823900_14824982.mRNA mRNA upstream 270788 14823771 ~ 14825387 (-) True CI01000340_14823900_14824982
CI01000340_14835497_14846831.mRNA mRNA upstream 282253 14835236 ~ 14846831 (-) True CI01000340_14835497_14846831
CI01000340_14872482_14891188.mRNA mRNA upstream 319097 14872080 ~ 14891618 (-) True CI01000340_14872482_14891188
CI01000340_14894726_14899916.mRNA mRNA upstream 340610 14893593 ~ 14899916 (-) True CI01000340_14894726_14899916
TU567402 other downstream 227293 14213348 ~ 14320277 (-) True G494710
TU567403 other downstream 227293 14213348 ~ 14320277 (-) False G494710
TU567401 other downstream 227293 14320240 ~ 14320277 (-) True G494710
TU566559 other downstream 1874045 12646587 ~ 12673525 (-) True G493928
TU565795 other downstream 2430670 12108993 ~ 12116900 (-) True G493266
TU567578 other upstream 4640 14557623 ~ 14559023 (-) True G494872
TU568273 other upstream 1053758 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 1618694 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 1961916 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 2490740 17043723 ~ 17045688 (-) True G496845

Expression Profile