RNA id: TCONS_00022082


Basic Information

Item Value
RNA id TCONS_00022082
length 2140
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_010408
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5169775 ~ 5173443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctatattGACATTTTTCTGCCGTGGTCAGTTTGCTCGTAGCTCACTTTGCATGCTGTTATGCTTCAGAGTGATCGCttttacaaaagaaataaaattaatgtaaaatcaaggtaaaactgcTCTTTTCTCTTACgtctgcttctgaaaacactattggttgggtttagggaagaattGAGCTCAATGATTCGCAAGCTGATCCATTTGACAAGCTATGCCTTCTCCTGGAGGCGTACATGATGAACGTTTGTCTGAAACGTACaataaaatgtaccctaagtaacaaGTTTTGGATTTGCACAAATGTaggcagcgccctctagtggatttgtcatctaaaacttacaacaaaatacacactaggtaacgtatttcagattcaacAAATGTAGACTGCACCTTCtattggatttgtcatctgaaacgtgcagcGAAACACAccataagtaacatatttcagattcatacaaatgtagacagcgccctctagtgaatttttgtcatctgaaacgtacgaCATAACACACCCTAAGTGACGTATTTAAGATCACACAAATGTAGactgtgccctctagtggatttgtcatctgaaacgtacaacaaatcACACACTATGTaatatatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatctgaaacgtgcagcgaaacacaccctaagtaacatatttcagattcgtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACtaggtaatgtatttcagatttgcacaaATGTAAAAAGCGCCCTCTagaggatttgtcatctgaaacgtgcagcGAAACACACCCTAAGTCACGTATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACATAACAcaccctaagtaatgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACTAGGTAATGTATTCCAGATTTGCACAAATGTAaaatgcgccctctagtggatttgtcatctgaaacgtgcagcGAAACACCCTAAGTCACGTATTTCAGATTCGTACAAATGTAGATAGCGCCctgtagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaaCATCGCACAAATGTAGactgcaccctctagtggattagtcatctgaaacgtgcaacgaaacacaccctaagtaacgtatatCAAATTCgcaaaaatatagacagcgccctctagtggatttgtaatctgaaacgtgcaacgaaACACACCTGTAGCAACATATTTAACGTTTCAGAAAAATGTAGACTGAGGCAAGTATTTACAATGAGTGAAACATAAAGAACTTTTGGACTCGACTATAATGAACAATGAAGACCATCTAATGTGACATGTTTTATTGGGACGTTTGTTTaacgtttttaaaatgttattacttATTTAGGAACgtaatgtttaacagaaatgTCTCTTAATGTGCATATaaccaatacatttttttaaagctgaaCAATTCAAACTGTCAGAGAACATTTTCTTGATGCTTAGTTGAGGATTAATTTACTTCCGCtataaaagaataaaagtttCCTGATAATCTACTCTCATCTTGTCATCCAAGATGTTAATTTCTGTCTCTTAATCAGtcgaaaataaataaaggttttgaggaaaacatgcaGAATTGTTGTCCAGATAGTGGACTTCTGTGGTGCCCAGTGGCACTTGTAGAAAGACTCCAGGATTATTGCTATAGTAAATGCAAATGTATGTGTCATCTACAGATTCTGTTGATTTACAATTGAATTGATATCCTCATAtctttagtttaaataaaatttcacaagTTTGATGCTATTTTTTGCCAGAGTTGTTTgtcattatacatatatatatatatatatat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020466 lncRNA downstream 15802 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00020463 lncRNA downstream 23507 5145132 ~ 5146268 (-) False XLOC_010407
TCONS_00020448 lncRNA downstream 474152 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00022081 lncRNA downstream 611278 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00022080 lncRNA downstream 902039 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00022084 lncRNA upstream 281016 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022085 lncRNA upstream 408551 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022086 lncRNA upstream 464122 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022087 lncRNA upstream 574144 5746308 ~ 5786042 (-) False XLOC_010414
TCONS_00022088 lncRNA upstream 603885 5776049 ~ 5786003 (-) True XLOC_010414
TCONS_00020464 mRNA downstream 15743 5145132 ~ 5154032 (-) False XLOC_010407
TCONS_00020465 mRNA downstream 15751 5145580 ~ 5154024 (-) False XLOC_010407
TCONS_00020461 mRNA downstream 26599 5110459 ~ 5143176 (-) False XLOC_010406
TCONS_00020462 mRNA downstream 26651 5110551 ~ 5143124 (-) True XLOC_010406
TCONS_00020460 mRNA downstream 53782 5110455 ~ 5115993 (-) False XLOC_010406
TCONS_00020467 mRNA upstream 434974 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020468 mRNA upstream 478331 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020469 mRNA upstream 545596 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020470 mRNA upstream 614606 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA upstream 628416 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020459 other downstream 62358 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 108146 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 450390 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 550010 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 642128 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020472 other upstream 649133 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 698409 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 1656388 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 2047828 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 2521717 7693881 ~ 7696211 (-) False XLOC_010438

Expression Profile

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