RNA id: TCONS_00022083



Basic Information


Item Value
RNA id TCONS_00022083
length 3669
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id XLOC_010408
representative True

Chromosome Information


Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5169775 ~ 5173443 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CAATGCATAtctgtcatttgaaaacaaaagaaaatgggTCGTTGATGACAACTGCGTATTCAAAAGCACAATGTACAAAACTGCACATAATATACAACATTATAAAAAAGTCAAGACAAAACACGTGATATAGTTCAGGACTTTAGGAACTACTCAAaacgatgatgataataataatacaaggaAAACAATGATATGGAGCTTAGGACTTTATTTACGCACGATGCAATATTGCAGCTTCTTGCATGTTTCCAAAAGCTATTTTCAGGTGATGTTGCAATTTCCCAACCAGACTTATCATCTGTGATGATGTGGTATCAAAATATATGAATATGGATGCATGATTTATTGATCTCGGTCAAAATCTGCTATTAATGTCAGCTGATAATTCGCTGTCGATTATTTCTAAACCAGGCTGCAAACACTGTTTTTAAGACGACACACGAAACAACATGACTGTGTATGACGGTTTCTGGAAGCTGCATCTGTAATTCTGAGCCAATCCTCATGTTATTTGTGAAGTACCCACATAGATACatgcaaatatatgcaaatgacatatatgacatacaagttcatactTGGATTTTACGCACaacatatatgtcatatatgcaacaaaTATAGCATATATACTGAtcttataaaacaaatatgaatcaAATAACTCGCTCAATATGTTTGACAAATAAATGAGATAATGTGAGGGTTACAAGAACATGTATTGTAGAAAAAACGTGATGAATCAAACCTAAAATGTGCGATGGAAAATACATGCCTTAGACTACTTTTTTGTGAAACCGCAAAAAACGTACTTTAACAGACGTTTGACTGTAGTTTTAGGTAAAGTGAACACTAGGGGGCGGTATGATGACAAGAACATTAAtatcttttcacactaatgatatttacagagaCATTATTGATGATTAAAGGATTATTTTCGGGCAATTCACACATTAAACATTTCATTgctgtctatgatttgtaataaATACGTTTGGGTcacctatcatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctctatattGACATTTTTCTGCCGTGGTCAGTTTGCTCGTAGCTCACTTTGCATGCTGTTATGCTTCAGAGTGATCGCttttacaaaagaaataaaattaatgtaaaatcaaggtaaaactgcTCTTTTCTCTTACgtctgcttctgaaaacactattggttgggtttagggaagaattGAGCTCAATGATTCGCAAGCTGATCCATTTGACAAGCTATGCCTTCTCCTGGAGGCGTACATGATGAACGTTTGTCTGAAACGTACaataaaatgtaccctaagtaacaaGTTTTGGATTTGCACAAATGTaggcagcgccctctagtggatttgtcatctaaaacttacaacaaaatacacactaggtaacgtatttcagattcaacAAATGTAGACTGCACCTTCtattggatttgtcatctgaaacgtgcagcGAAACACAccataagtaacatatttcagattcatacaaatgtagacagcgccctctagtgaatttttgtcatctgaaacgtacgaCATAACACACCCTAAGTGACGTATTTAAGATCACACAAATGTAGactgtgccctctagtggatttgtcatctgaaacgtacaacaaatcACACACTATGTaatatatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatctgaaacgtgcagcgaaacacaccctaagtaacatatttcagattcgtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACtaggtaatgtatttcagatttgcacaaATGTAAAAAGCGCCCTCTagaggatttgtcatctgaaacgtgcagcGAAACACACCCTAAGTCACGTATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcatctgaaccGTACGACATAACAcaccctaagtaatgtatttaagATCGCACAAATGTAgactgcgccctctagtggatttgtcatctgaaacgtgcaacaaaatacACACTAGGTAATGTATTCCAGATTTGCACAAATGTAaaatgcgccctctagtggatttgtcatctgaaacgtgcagcGAAACACATCCTAAGTAACATTTCAGATTCGtacaaatgtagacagcgccctctagtggatttgtcattgaACCGTACGACAtaacacaccctaagtaacgtatttaagATCGCACAAATGTAgactgcgccctctagtggattagtcatctgaaacgtgcaacaaaataaacactaagtaatgtatttcagatttgcacaaatgtaaaatgcgccctctagtggatttgtcatttgaaacgtGCAGCGAAACACACCCTAAGTCACGTATTTCAGATTCGTACAAATGTAGATAGCGCCctgtagtggatttgtcatctgaaccGTACGACAtaacacaccctaagtaacgtatttaaCATCGCACAAATGTAGactgcaccctctagtggattagtcatctgaaacgtgcaacgaaacacaccctaagtaacgtatatCAAATTCgcaaaaatatagacagcgccctctagtggatttgtaatctgaaacgtgcaacgaaACACACCTGTAGCAACATATTTAACGTTTCAGAAAAATGTAGACTGAGGCAAGTATTTACAATGAGTGAAACATAAAGAACTTTTGGACTCGACTATAATGAACAATGAAGACCATCTAATGTGACATGTTTTATTGGGACGTTTGTTTaacgtttttaaaatgttattacttATTTAGGAACgtaatgtttaacagaaatgTCTCTTAATGTGCATATaaccaatacatttttttaaagctgaaCAATTCAAACTGTCAGAGAACATTTTCTTGATGCTTAGTTGAGGATTAATTTACTTCCGCtataaaagaataaaagtttCCTGATAATCTACTCTCATCTTGTCATCCAAGATGTTAATTTCTGTCTCTTAATCAGtcgaaaataaataaaggttttgaggaaaacatgcaGAATTGTTGTCCAGATAGTGGACTTCTGTGGTGCCCAGTGGCACTTGTAGAAAGACTCCAGGATTATTGCTATAGTAAATGCAAATGTATGTGTCATCTACAGATTCTGTTGATTTACAATTGAATTGATATCCTCATAtctttagtttaaataaaatttcacaagTTTGATGCTATTTTTTGCCAGAGTTGTTTgtcattatacatatatatatatatatatat

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00020466 lncRNA downstream 15802 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00020463 lncRNA downstream 23507 5145132 ~ 5146268 (-) False XLOC_010407
TCONS_00020448 lncRNA downstream 474152 4685663 ~ 4695623 (-) True XLOC_010399
TCONS_00022081 lncRNA downstream 611278 4554071 ~ 4558497 (-) True XLOC_010396
TCONS_00022080 lncRNA downstream 902039 4235317 ~ 4267736 (-) True XLOC_010391
TCONS_00022084 lncRNA upstream 279737 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022085 lncRNA upstream 407272 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022086 lncRNA upstream 462843 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022087 lncRNA upstream 572865 5746308 ~ 5786042 (-) False XLOC_010414
TCONS_00022088 lncRNA upstream 602606 5776049 ~ 5786003 (-) True XLOC_010414
TCONS_00020464 mRNA downstream 15743 5145132 ~ 5154032 (-) False XLOC_010407
TCONS_00020465 mRNA downstream 15751 5145580 ~ 5154024 (-) False XLOC_010407
TCONS_00020461 mRNA downstream 26599 5110459 ~ 5143176 (-) False XLOC_010406
TCONS_00020462 mRNA downstream 26651 5110551 ~ 5143124 (-) True XLOC_010406
TCONS_00020460 mRNA downstream 53782 5110455 ~ 5115993 (-) False XLOC_010406
TCONS_00020467 mRNA upstream 433695 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020468 mRNA upstream 477052 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020469 mRNA upstream 544317 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020470 mRNA upstream 613327 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA upstream 627137 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020459 other downstream 62358 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 108146 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 450390 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 550010 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 642128 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020472 other upstream 647854 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 697130 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 1655109 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 2046549 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 2520438 7693881 ~ 7696211 (-) False XLOC_010438

Expression Profile


Expression of TCONS_00022083 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.
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Expression of TCONS_00022083 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.