RNA id: TU568163


Basic Information

Item Value
RNA id TU568163
length 76
lncRNA type sense_over
GC content 0.49
exon number 1
gene id G495398
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15419793 ~ 15419989 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAAATCTACGCAATCACCTAAAGAACTCAATGGCGACGGCTTATATGCGAGATCAGGATTGCATTTAGAGAATGGCCTGGCCTGGTATTTGGATACCGTGTCTAATCCCTTGCAGATACACAGGGGATTTGTGATTGTGTAGCGTCACGTCGGATATCTGAGCTCATACTAGGCGGCCCCACACGCAGAGACCATGTACTGCCTCCAGTGGTTACTCCCGGTCCTCTTGATCCCCAAACCGTTGAATCCGGCCCTGTGGTTCAACCACTCCATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGTTGGAGAGGAAGCCGTGTACCATTTGTGCCTTAGTCTTCCTGGCGGCGCTGTTTCTCATCTGCTACAGCTGCTGGGGAAACTGCTTTCTGTATCACTGCCACGATTCTCCACTGCCGGACTCAGCACATGACCCCAACATCGTTGGCACCTAGACTCGGTTTTCCGCACGGACCCTGGGGCCGTCTCAGTCCGGACTGTGAGTAGAAGAGCCGCGGGGAATGCTGGAAAGTTTCAGTTCGTTATACCCATGTTGAAAACCGCTCTCTGCTGTAACCCATAACAAAGCGCCCTCGCTCCCTGACTTGAGTCTCCTCCCCGCGGCGAACGGCGTCTGAAGCTTGCATGGGTTCCATTCTCGTTGTGTTCGGTGCACTTTCTTTCATTTCTGGATGCTGAATTTTTCCAAAGGGGTAGATGATAATGTGTGCGTGTGTATACGTTTGTATATTGCGATTTTGGGTTTCTGTTCATGTGTCAATAATCAGTATGAGTCCAAGTGTTAAGCGGATAAACGGCGGATGAATTTTGTCATGTACGTTGAGCTGAAGGCGTGCTTCTGCACTGCTGAGTCAGCTCAAATGCTGTCACCACTTTTAATTCAATAAAGTTTCTAATGATCTAAGTTGAGATGCTGTGTGTGTGCAGATGAAAAATTGTCTTCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568233 lncRNA downstream 122772 15294273 ~ 15295000 (-) True G495450
TU567618 lncRNA downstream 648558 14769004 ~ 14769214 (-) True G494909
TU567552 lncRNA downstream 661053 14754883 ~ 14756719 (-) True G494854
TU567561 lncRNA downstream 668332 14747970 ~ 14749440 (-) True G494861
TU567573 lncRNA downstream 672715 14743717 ~ 14745057 (-) True G494867
TU568253 lncRNA upstream 5781 15425649 ~ 15430109 (-) True G495459
TU568191 lncRNA upstream 11348 15431216 ~ 15431529 (-) True G495415
TU568300 lncRNA upstream 47194 15467062 ~ 15467329 (-) True G495502
TU568302 lncRNA upstream 52656 15472524 ~ 15472833 (-) True G495504
TU568328 lncRNA upstream 106662 15526530 ~ 15526746 (-) True G495530
CI01000340_15334006_15357378.mRNA mRNA downstream 60394 15333088 ~ 15357378 (-) True CI01000340_15334006_15357378
CI01000340_15318569_15329407.mRNA mRNA downstream 87269 15318532 ~ 15330503 (-) True CI01000340_15318569_15329407
CI01000340_15312803_15315594.mRNA mRNA downstream 102178 15312741 ~ 15315594 (-) True CI01000340_15312803_15315594
CI01000340_15035570_15229330.mRNA mRNA downstream 188442 15035570 ~ 15229330 (-) True CI01000340_15035570_15229330
CI01000340_14910995_14919035.mRNA mRNA downstream 498415 14910599 ~ 14919357 (-) True CI01000340_14910995_14919035
CI01000340_15433393_15440042.mRNA mRNA upstream 13448 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
CI01000340_15549307_15555642.mRNA mRNA upstream 128607 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15559928_15562340.mRNA mRNA upstream 139734 15559602 ~ 15562340 (-) True CI01000340_15559928_15562340
CI01000340_15614801_15623230.mRNA mRNA upstream 194859 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15666594_15673044.mRNA mRNA upstream 246592 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
TU567578 other downstream 858749 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 862604 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 867274 14548727 ~ 14548779 (-) False G494879
TU567403 other downstream 1097495 14213348 ~ 14320277 (-) False G494710
TU568273 other upstream 186873 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 751809 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 1095031 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1623855 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1757624 17177492 ~ 17242739 (-) True G496853

Expression Profile