RNA id: CI01000340_15559928_15562340.mRNA


Basic Information

Item Value
RNA id CI01000340_15559928_15562340.mRNA
length 607
RNA type mRNA
GC content 0.39
exon number 2
gene id CI01000340_15559928_15562340
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15559602 ~ 15562340 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCCAGAGGGCCGCAGGTTAAAGAGCATTCAGAGGAGTACAGAGACAGGGCTGGCAGTAGAGATGCCCAGTCGTACGGTCCGACAGGCGAGCCACGAGTCCATCGAGGACAGCATGAACAGCTATGGCTCAGAGGGAAACTTCATCATGGGAGTAAAATCCAGCCCAATTCAGCTGGATTACTGCGCAGTTTATGGAGCATGGGGATTACAGTTTTGGCTGCCATCGCTGAGGATATTTTACCATATTACATTGCATCTTATGCATCTCATGAATACATAACGGAGTAAAACATATTTTACATAAACACTCGCTGTCGGTCTGAGCTCTGACAAACAACAGTGATGGAAAGTCATAGCGCAAGGTTGATTTGATGCAATGGTATTTTTGGATAAACTTCTGTGGAAGTTTCTCTAATATTTATTCAATATCTATTTTATGCGGTTTCCATTAGATATTATTTGTAACTTGCCTTTTAGGCTAGATAAAGTTGGGCTTTTTGCCATTAAACACTTTAAACGTTATATGAAAAGTAAGAAAACATTACGAAGAGTACATTTATAAAAACATTTTAAAAATGTAAAAGCATTACAAAAAGCATCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU568332 lncRNA downstream 25645 15533729 ~ 15533957 (-) True G495534
TU568328 lncRNA downstream 32856 15526530 ~ 15526746 (-) True G495530
TU568302 lncRNA downstream 86769 15472524 ~ 15472833 (-) True G495504
TU568300 lncRNA downstream 92273 15467062 ~ 15467329 (-) True G495502
TU568191 lncRNA downstream 128073 15431216 ~ 15431529 (-) True G495415
TU568336 lncRNA upstream 23179 15585519 ~ 15585808 (-) True G495538
TU568337 lncRNA upstream 24813 15587153 ~ 15587443 (-) True G495539
TU568272 lncRNA upstream 44401 15606741 ~ 15610500 (-) False G495475
TU568283 lncRNA upstream 51159 15613499 ~ 15623995 (-) True G495485
TU568343 lncRNA upstream 72176 15634516 ~ 15634737 (-) True G495545
CI01000340_15549307_15555642.mRNA mRNA downstream 1823 15548475 ~ 15557779 (-) True CI01000340_15549307_15555642
CI01000340_15433393_15440042.mRNA mRNA downstream 119415 15433316 ~ 15440187 (-) True CI01000340_15433393_15440042
CI01000340_15418307_15418626.mRNA mRNA downstream 140976 15417831 ~ 15418626 (-) False CI01000340_15418307_15418626
CI01000340_15334006_15357378.mRNA mRNA downstream 202224 15333088 ~ 15357378 (-) True CI01000340_15334006_15357378
CI01000340_15318569_15329407.mRNA mRNA downstream 229099 15318532 ~ 15330503 (-) True CI01000340_15318569_15329407
CI01000340_15614801_15623230.mRNA mRNA upstream 52387 15614727 ~ 15623456 (-) True CI01000340_15614801_15623230
CI01000340_15666594_15673044.mRNA mRNA upstream 104120 15666460 ~ 15673044 (-) True CI01000340_15666594_15673044
CI01000340_15677629_15704765.mRNA mRNA upstream 115250 15677590 ~ 15706680 (-) True CI01000340_15677629_15704765
CI01000340_15723386_15729584.mRNA mRNA upstream 160770 15723110 ~ 15729978 (-) True CI01000340_15723386_15729584
CI01000340_15741859_15763888.mRNA mRNA upstream 179017 15741357 ~ 15763888 (-) True CI01000340_15741859_15763888
TU567578 other downstream 1000579 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1004434 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1009104 14548727 ~ 14548779 (-) False G494879
TU567403 other downstream 1239325 14213348 ~ 14320277 (-) False G494710
TU568273 other upstream 44401 15606741 ~ 15612563 (-) True G495475
TU568418 other upstream 609337 16179988 ~ 16180085 (-) True G495611
TU569607 other upstream 952559 16519911 ~ 16519974 (-) True G496628
TU569869 other upstream 1481383 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 1615152 17177492 ~ 17242739 (-) True G496853

Expression Profile