RNA id: TCONS_00020467


Basic Information

Item Value
RNA id TCONS_00020467
length 5343
RNA type mRNA
GC content 0.35
exon number 1
gene id XLOC_010410
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5607138 ~ 5612480 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGTGTATTTCTTGTTTCTGGTCTATCGTTCCGGTAGAGAGCGAGTGCTGGAGGATGGCAAGGCGGATAGACTCCAAGGCGGTTGGCAACAACTGGAATGTGAGTGGACAGGAGAATGCAGACGGAAGTGACGAATCAGGAAATGAAGTAGGAGATATGGAAGTAGTTTGCGGGAACTATGAAAAATGGGACATGGTTAAAAACAACAAACGGAAAAAGAAACGAAGAAATAAATCTGATGAAAGTGATTCGGATAGATGCTCAGCCCTAGAGGAAACGGTGACAGTGGAATACAAGGTATTTGCTAAACCTGTGCAAGAAGGGGATACATTTGGAGGTATGAATCCGATACAACTAACCAAAACACTGCATAAGGAAATAGGTATAATAAAGAGTGCAAAAATCTTGAGAAACGGATCGATACTGATTTTCTGTAAAGATGAAAAACAGCAAGCTAAAGCAATTAAGGTGAATAAAATCAATGGAAAAAAAGTAGAATGTTCCAAGACAAACGGGAAAAGATATGTTAAAGGCGTTGTGACAGGAATTCCTGTCAATGTTTCGGCAGATGAAGTGAAAGCAAGCATAACAAATGCAAATGTGGTCGAAGCTAAACGCTTAAGAACAAACAGAAATGGAAGTGCTTGTGATAGTCTTTCTGTTATGGTCACATTTGATGAGGAGACACTCCCGAAAAAGATATTAATCGGGTATATGTGCTATGATGTAAGACTGTACATTCCCCCGCCCCTTCGGTGTTATAAATGTCAGAGATTTGGACATATAGCAGCTTTTTGCAAGGGAAAGCAAAGGTGTGGTAAATGTAGTGGGGAACACGAATATGGAAAATGTGAAGAGGGTGCAAAGTTGAAATGTTGCAACTGTGGAGGGGATCATAGCTCAGCGTATCGAGGGTGTGAGGTTAGCAAAAGGCAGGCAGAAGTACAAAGAGTAAAAGCTGTTCAAGGAATCAGCTATGCGGAAGCATTAAAAAAGGTTCCAGAAATTATGACTGTgtctaaacaaaatgaaaacaggaacaaaaatgcAGAGACATGTCAAAAATGTGAACAACTGAAAGCGGAAACTCTGATAGTGAGCAAAAATGATTTTGTAATATTCATGGCAGAGATAATAAATTGTTCCGCTCAAACGAAAAGTAGAAATGAAAgaatcaaaataataatcaaatcagcAGAAAAATACCTGGATGTGAAGGATCTGCTCTGGGAAACGGTTAGGGACATCTTAAATGAAGATACACAATCATCCCAGCCTGGGGGTGGAACGTCTTAAATGTTAAACGTTCTACAATGGAATGCAAGAAGCTTAATTGCAAATGGccaagaatttaaaaaatatattgataatattataGAGAAACCTAATATAATATGCATACAAGAAACATGGTTAAAACCtcaattagattttaatattaaggGATATAATATAGTTAGAAATGATAGGAATCATAGCAGAGGAGGAGGAATTGCAACATTTATAAAAAGCGGAATGAAGTTTAGGAtagaacaaataaatacaaagtatGAATCAATTTTAATCAAGGTATGGACGGATAGAGGATGTATagacattattaattattataatccctgtgataaattaaatcaaaacataTTAGAAGAAGTAATGGGTGTACGACAAGACAGTGTTTTATGGTGTGGGGATTTTAATTCACATAATTCATTATGGGGGAGTAATAGTAATGATGCAAATGGGATTCTTCTTGAAGAATTTATAgatgaaaaatatttagtttgtcTAAATAATGGTGAAGGCACACggtataattgttttaaaaatacagaaagcatACTAGACTTAACATTTATTAGTAGTTCATTAGCAGCAGTTAGCACATGGAAAGTACTCAAGCACAATACAATAGGTAGTGACCATTACCCAGTAGTAACTAAAATTGGATTAAAGATAATGTATGAAAAAGAAGATAGAATTCCAAGATGGAAATTGGAGAAAGCAAATTGGAAAGAATTTCAAGAATTATGTGATAAGAGAGTTAtgacaatacaaataataaaccagagagatgtaaacattttaaataataaaattgttaatGAAATAATTCAAGCAGCCGAAGAAATAATACCTAAAAGTAAAGGAGTTGGTTGTACTAAAAATGTACCTTGGTGGAATAATGATTGTAAAGCAGCTATTAAAGCAAGAAATAAAGCATTTAGACATCTTAAAAAACACCATTCACTGGAAGCTATGATCATGTATAAAAAGGCTCAGACAATGTTAAGAAAAactattaaaacacaaaagcGTATATTCTGGAGAGAATATTGCAATAGTCTTGGACGAGAGGTACAATTATCAGAGGTGTGGGGTATGATTAGAAGAATGGCAGGTGTTAGACGAAATTATGAATTACCAGTGTTACAGTATGGCGATATAGTAGCGATCAGCAACCTAGAAAAGGCGGAACTATTAGTCCAACATTTTAGAAATGTACATAGTTCAGATAATCTCTCTGAAGAGGCTAGGAAATGCAGAAATACTACATTAACTAAACATCCTGATCTtttaaagaaagtaaaaacaacagaaaatccTTTAGATTTACAATTTAATATGTTTGAATTAAAACGAGCAATCATTAGCGCAAGACAAACTGCCCCAGGTAAGGATGAAATATGCTATAAAATGTTGTCACACATGTCAGAGGCATCACTAGAAATAGtactaaatttatttaatcaaatttggGATATGGGTCAATTACCTATAGCATGGAAACAATCTATAGTAGTACCTATACTTAAACCAGGGAAAAATCCATCAGATCCTTCTAGCTATAGACCCATTTCACTGACATCCCACTTATGCAAAATAATGGAAAGAATGATTACAGAAagaattacatattttttagaAAGCAAAAACCTTTTTTCTCCATATCAGAGTGGGTTCCGCAGAGGCAGAAATACTATGGACTCAGTATTATGTTTGGAATCAGACATCAGGAAAGCACAGACTAACAAAGAAGTTGTGATAGCTATCTTTTTTGATATAGAAAAGGCATACGATATGCTTTGGAAAGAGGGACTGCTGATTAAATTAAAATCTTTAGGAGTCACTGGCAAAACGTATAATTGGGTCATGGATTTCTTATTTGGAAGAAAAATACAAGTTAGGGTAGGAAAAGAATATTCACATGAATACACAGTGGAAAATGGAACTCCTCAAGGTAGTGTTTGCAGCCCATTATTGTTCAATATAATGATAAACGACATTTTCTCTCAGATTGAACAAAGTATAGGAAAATCATTGTATGCAGATGATGGGGCACTATGGATTAGAGGTCGGAATGTGTCATTTGtacaaaagaaaatacagaatGCAATATTTGAGGTAGAAAAATGGGCAAATAAATGGGGATTCAAACTATCTGTTGCAAAAACTCAGGTCATCTGTTTCTCAAGACGGCATAAAACCACATCACTCGCTTTAAAACTATATGGACAACCACTAGAACAAGTAAAAACTGTAAGGTTTCTTGGGGTTTGGTTCGATGAAAAGCTGACATGGAAGGATCATCTGaataaaatcacagaaaaaagtaaaaaggTTGTTAATGTACTTCGTTGCCTGTCAGGGCAAGAGTGGGGAGCGAGTAGAACATCACTACAAAATATATACTGGGCCCTCATGAGATCTGTTTTTGATTATGGATGTATAGCTTACATGTCGGCAGCAGAGTCAAACCTCAAAAAATTAGATGTATTACAAGCACAGGCCCTTAGAATCTGTAGTGGATCATTTAGAACCTCACCAGTTTCATCTATGCAGGTTGAAATGGGAGAAATGCCCTTAAGCATTAGGAGAATGAAATTAATGATGGCATATTGGGTTAACATTCAGGGACAAATTGAATCACATCCAACAAAAAGAACATTACTAGAATGTTGGGAGCATGAGGAAACTAATTTCATAAGTTTCGGATGGATAGCTGAGGCAAAAGCCAGAATAATTGGATTAGATCAACTGCAATACTGTAAGGCAGTCCCAATCCCATATATTCCGCCATGGTTTTTTCCATTACCTAAAGTAGATTTCAATATACAACAGGAGTTAAAAGATAACAATAATATTCTTCCAACAAAATATATAGTGCagaattatttagaaaaaaattataaagaatcaatatttttattcacAGATGGATCTAAAGACCTACAAACAGGCCATACAGGCGCAGCAGTGTATATCCCAGTTAATCAATACCATATTAAGAAAAGAATAACTAATAATATATCAGTATATACAACAGAGTTAATTGCAATACTAATTGCCCTGCAGTGGATTGAGGAGAATGACATATATAATGTAGTAATTGCATCAGATAGCTTTTCATCACTGGAAAGTATAAGATCTGGAAGGTCTTCATACAGAATggatattcttaataatatactCAGTAAgacatattatattaaaatgaaggGCAAATCAATATATTTCATTTGGGTTCCTGCTCACGTAGGTGTGGAAGGTAATGAGAAGGCAGACTTTCTGGCCAAACAAGCTCTCAGAATTAGTAAAGTAAATCTAGAAGTCCCATTGAGCAAAGCAGAAGCTAAAATCATGATAAGAACATATGCACAATCAATATGGCAAGTACACTGGGATAACATTGATACAGGTAgacatttatataatatacagAAACAAGTTGGAACTGGGAGGAAGGAGAACAGAAATCGTAGGGAAGGAAGTATTATAACTCGGATGAGAATAGGTCACACTGGACTCAATCATACATTACATAAAATAGGGAAACACCCAACTGGGCAATGTATACATTGTAATCAACAAGAAACAATAGAACATATTTTATTTCACTgtagtaaatataataaagaacGAAACAATCTTATTCAGTCAGTTAAAAAGAGCAATCTTCAGCATTTTACATTGGCAGGTTTATTAGGAAACAAATCTAGTGAggtatataatgatataataaaatttattaaagaaACCCAGTTAGAGGAAAGAATATAGAGATAATATCAGAAGAATTGTTAGTCCACcccatttttattacattttattactattataaaggttttttttttttttttttttctttttttttttctttcctctctcCCCCTCCCCTCACAATTTCCTCCCCCTTTCTCTCCCTTCATGTAATTTATACACTTCAGAAAGTATTCAACTAGTTCCATACTCCATTCCAgtcggtggcggtaatgcacctatAAGTCTGGTTGCCAACCGCCAGTAAaacccaaagaagaagaagaagaagaagaagatttcTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000157944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022085 lncRNA downstream 18518 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022084 lncRNA downstream 18572 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00022083 lncRNA downstream 433695 5169775 ~ 5173443 (-) True XLOC_010408
TCONS_00022082 lncRNA downstream 434974 5169775 ~ 5172164 (-) False XLOC_010408
TCONS_00020466 lncRNA downstream 453165 5145862 ~ 5153973 (-) True XLOC_010407
TCONS_00022086 lncRNA upstream 23806 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022087 lncRNA upstream 133828 5746308 ~ 5786042 (-) False XLOC_010414
TCONS_00022088 lncRNA upstream 163569 5776049 ~ 5786003 (-) True XLOC_010414
TCONS_00021780 lncRNA upstream 570695 6183175 ~ 6188967 (-) False XLOC_010417
TCONS_00022089 lncRNA upstream 635543 6248023 ~ 6249246 (-) True XLOC_010418
TCONS_00020464 mRNA downstream 453106 5145132 ~ 5154032 (-) False XLOC_010407
TCONS_00020465 mRNA downstream 453114 5145580 ~ 5154024 (-) False XLOC_010407
TCONS_00020461 mRNA downstream 463962 5110459 ~ 5143176 (-) False XLOC_010406
TCONS_00020462 mRNA downstream 464014 5110551 ~ 5143124 (-) True XLOC_010406
TCONS_00020460 mRNA downstream 491145 5110455 ~ 5115993 (-) False XLOC_010406
TCONS_00020468 mRNA upstream 38015 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020469 mRNA upstream 105280 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020470 mRNA upstream 174290 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA upstream 188100 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020474 mRNA upstream 570021 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020459 other downstream 499721 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 545509 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 887753 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 987373 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 1079491 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020472 other upstream 208817 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020473 other upstream 258093 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 1216072 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 1607512 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 2081401 7693881 ~ 7696211 (-) False XLOC_010438

Expression Profile

//