RNA id: CI01000340_16515291_16518346.mRNA


Basic Information

Item Value
RNA id CI01000340_16515291_16518346.mRNA
length 816
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000340_16515291_16518346
representative False

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16514899 ~ 16518531 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAGAGCTAGCGCAACCACAGCAGTGCTTTGAAGCCACACCACAAGCCACACATGCCCAGTTACATTGCCATATGACTTCGCCTTTATGACAGAAGTCTGTAACATGCTCTCTGTTTTTCAGGACTGAACAGACATGATCTGCTGGCCGGTCCACCTCCTCTAAAATAATGCATCATCAATAAAAATGGGAGGCAGCGGATCCAAAACTAAAGGAGTCTGGCCTTTTACCAGCTCTGGAGCTGGAGGAGAAGCTCCCGGTGAGGTCAGTGAACAGTGTTTAGCGCGTCTCCGAGGCTCCAAGAATGCGACACCATTTGTCTTCACAAGGAGAAGCTCCTTGTATTTTGATGAAGATGGAGATCTAGCTCATGAGTTTTATGAGGAGACTGTGGTGACCAAGAACGGCAAAAAGAAAGCCAAGCTGAAAAGAATTCAGAAAAACCTCATACCTCAGGACGCCCCATGGCTCTCTGTTACGACAGGGAGGGCGTTTGCCCTTCAGCTGGCTTTGACCAAAAAGTTGAATCATATTTTCAGATTTTCATTCTGGTGTATAGACAGCAGACGTACGTCGCTCTGTCTTCTGTGATGTACAGTAAGGAACGCATGTGCAATGAGAGTGTGTAAGTAAGGAACAATGCAGGGATTGTACATAAATCACGTGTTTGTTATTGTGCGTGTTTATCATTCTATTGTATATTATAATATTCTGTTGTATCAAAGTCTGACTTTGTTTGTTTGTTGGGTTGCAAGCCACATCTGCACTTGTAATCGTTTATTGTACAGTAAATTATGAGTTAATATATTTGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU569620 lncRNA downstream 55156 16459641 ~ 16459909 (-) True G496641
TU568501 lncRNA downstream 199935 16311206 ~ 16315130 (-) True G495682
TU568486 lncRNA downstream 228731 16285926 ~ 16286334 (-) True G495668
TU568456 lncRNA downstream 417864 16096190 ~ 16097201 (-) True G495642
TU568443 lncRNA downstream 498930 16014324 ~ 16016135 (-) True G495630
TU569633 lncRNA upstream 7015 16525546 ~ 16527155 (-) True G496651
TU569642 lncRNA upstream 60411 16578942 ~ 16579856 (-) True G496658
TU569643 lncRNA upstream 61582 16580113 ~ 16580492 (-) True G496659
TU569672 lncRNA upstream 124093 16642624 ~ 16643141 (-) True G496685
TU569692 lncRNA upstream 176608 16695139 ~ 16695401 (-) True G496698
CI01000340_16502291_16507977.mRNA mRNA downstream 5117 16501927 ~ 16509948 (-) True CI01000340_16502291_16507977
CI01000340_16492560_16496822.mRNA mRNA downstream 17103 16492141 ~ 16497962 (-) True CI01000340_16492560_16496822
CI01000340_16408042_16409453.mRNA mRNA downstream 102129 16407985 ~ 16412936 (-) True CI01000340_16408042_16409453
CI01000340_16353966_16364847.mRNA mRNA downstream 150169 16353816 ~ 16364896 (-) True CI01000340_16353966_16364847
CI01000340_16278246_16280290.mRNA mRNA downstream 234248 16278027 ~ 16280817 (-) True CI01000340_16278246_16280290
CI01000340_16540718_16544143.mRNA mRNA upstream 22187 16540718 ~ 16544143 (-) True CI01000340_16540718_16544143
CI01000340_16584213_16590736.mRNA mRNA upstream 65450 16583981 ~ 16592930 (-) True CI01000340_16584213_16590736
CI01000340_16616356_16625161.mRNA mRNA upstream 97024 16615555 ~ 16625161 (-) True CI01000340_16616356_16625161
CI01000340_16656861_16660297.mRNA mRNA upstream 137977 16656508 ~ 16660297 (-) True CI01000340_16656861_16660297
CI01000340_16661934_16665857.mRNA mRNA upstream 143002 16661533 ~ 16666655 (-) True CI01000340_16661934_16665857
TU568418 other downstream 334980 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 902502 15606741 ~ 15612563 (-) True G495475
TU567578 other downstream 1956042 14557623 ~ 14559023 (-) True G494872
TU567587 other downstream 1959897 14548727 ~ 14555168 (-) True G494879
TU567585 other downstream 1964567 14548727 ~ 14548779 (-) False G494879
TU569869 other upstream 525192 17043723 ~ 17045688 (-) True G496845
TU569877 other upstream 658961 17177492 ~ 17242739 (-) True G496853
TU570236 other upstream 1900787 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 2640338 19158869 ~ 19164472 (-) False G497442

Expression Profile