RNA id: TCONS_00020472


Basic Information

Item Value
RNA id TCONS_00020472
length 424
RNA type processed_transcript
GC content 0.50
exon number 4
gene id XLOC_010415
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 5786770 ~ 5873866 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCCGTGGCTGATCCTGAAGTAGTGGAAAATGTAAGTTTGGGCGAGTGAACAGAGAAAGCCCGTGGCTGAAGAAACATGAATGTGTGTAACAGCACTGATCTTCCTGAGGTGGAAATCATCAGTTTGCTTGAGGAGCAGTTGCCTCACTATAAGCTGAGAGCCGACACTATATACGGCTATGATCACGACGACTGGCTCCACACGCCTCTCATCTCCCCCGACGTCAACCTCGACCTGACCACTGAACAGATCGAGGAGACCCTCAAATATTTCCTCCTGTGTGCTGATCGAGTGGGCCAGATGACTAAGACATATAATGACATAGATGCTGTGACACGTCTCCTGGAGGAGAAAGAGCGGGATTTGGAGTTAGCGGCACGTATCGGCCAGTCTCTGCTGAAAAAGAACAAAAGCCTCACCGAG

Function

GO:

id name namespace
GO:0006605 protein targeting biological_process
GO:0048311 mitochondrion distribution biological_process
GO:0098957 anterograde axonal transport of mitochondrion biological_process
GO:0047496 vesicle transport along microtubule biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0022008 neurogenesis biological_process
GO:0008089 anterograde axonal transport biological_process
GO:0008104 protein localization biological_process
GO:0030425 dendrite cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005102 signaling receptor binding molecular_function
GO:0050811 GABA receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-182 Predicted to enable GABA receptor binding activity and myosin binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; mitochondrion distribution; and organelle transport along microtubule. Predicted to be located in early endosome. Predicted to be active in cytoplasmic vesicle; dendrite; and mitochondrion. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 68. Orthologous to human TRAK1 (trafficking kinesin protein 1).

Ensembl:

ensembl_id ENSDART00000142161

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022087 lncRNA downstream 35255 5746308 ~ 5786042 (-) False XLOC_010414
TCONS_00022088 lncRNA downstream 35294 5776049 ~ 5786003 (-) True XLOC_010414
TCONS_00022086 lncRNA downstream 177559 5636286 ~ 5643738 (-) True XLOC_010411
TCONS_00022085 lncRNA downstream 232677 5580715 ~ 5588620 (-) True XLOC_010409
TCONS_00022084 lncRNA downstream 232731 5453180 ~ 5588566 (-) False XLOC_010409
TCONS_00021780 lncRNA upstream 325194 6183175 ~ 6188967 (-) False XLOC_010417
TCONS_00022089 lncRNA upstream 390042 6248023 ~ 6249246 (-) True XLOC_010418
TCONS_00022091 lncRNA upstream 433192 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022090 lncRNA upstream 433192 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022093 lncRNA upstream 433192 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00020469 mRNA downstream 99911 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020468 mRNA downstream 149435 5650495 ~ 5671862 (-) True XLOC_010412
TCONS_00020467 mRNA downstream 208817 5607138 ~ 5612480 (-) True XLOC_010410
TCONS_00020464 mRNA downstream 667265 5145132 ~ 5154032 (-) False XLOC_010407
TCONS_00020465 mRNA downstream 667273 5145580 ~ 5154024 (-) False XLOC_010407
TCONS_00020474 mRNA upstream 324520 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020475 mRNA upstream 325504 6183485 ~ 6198543 (-) True XLOC_010417
TCONS_00020476 mRNA upstream 498479 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020477 mRNA upstream 528960 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020478 mRNA upstream 537330 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020459 other downstream 713880 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 759668 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1101912 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020445 other downstream 1201532 4615661 ~ 4619765 (-) False XLOC_010398
TCONS_00020438 other downstream 1293650 4527481 ~ 4527647 (-) True XLOC_010394
TCONS_00020473 other upstream 12592 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020493 other upstream 970571 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 1362011 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1835900 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1836813 7694794 ~ 7696216 (-) True XLOC_010438

Expression Profile

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