RNA id: CI01000340_18302048_18303998.mRNA


Basic Information

Item Value
RNA id CI01000340_18302048_18303998.mRNA
length 1190
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000340_18302048_18303998
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18301388 ~ 18304048 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCGAATTTACTGCCCATGTTAAAGAACACATTGTAATTTGACCTCAAAATGAACCGACGAAAAATAAGACCAAACTGGAAGACATTAATTCAAATCCCCCGCAGGGCTTCAGGGCACTTTGATCAGAACCTGTCAGTGCTTGATGTGGGGCATGTGTTTCCTACCCGTCAGCGCCTTACAGAAACGGCGGTACGCTGTGGCGCACGGGTCCACCCGCCACCCGAGACCCCCCTTCAGGATGTGGTGGGCTCGGCAGTAGCTGCACCCCCAAATGCACATGCATATACAGTTAATTTCCTGCATAAACCCCATCCGGATGTTTTTGACATCAGACGCCGGTTTGAGGCAGATCAGGCTGATTTTGTTTTCTTGTTTTATGTCAGCAAATGTGACCTTTATTCAAAGATTGTGTGCATGAACAAAGGGTTTCTAGTTAAGGACTTTAAAGCATCAGCGAGGGCCGAGGCAGAATGCGTGGGGGCAGGGCTGCAAAAACACATTTCGTGGAAGTTTTTTTATGAGCTGTAAATGCAGGAAACTTTGACAAGGCCTGGAAGTTGCTGATATTGTTTGGGCTGTGATTATGTGGCAGTTTGACAGGCCGACAGGCCCACCTGAGCGAGCTGAAGAGAAGCTAAAGCTAATCGCTAACGGAGAAAATACCACAGAACTTGCAAAATGAACTCAGCTGTGACCAACTACCTTTTCCCTGTGGGATTTGAGGCAGATCGTCGCACCGCTAGTGTTTTTAAATGTGTCTTCCCGTATTACATCCAGCCTCATGACTTGGTGAATCCCACCAATCACATGCCAAGGTCATACCCTACCAAAAAAAAAAAAAAAAGAAATAGTTTAGTAATGAAGCCATTCCATTGTAATACAAAAATGTATTTAATTTGTTTCCCTTTTGAGAATTTTTGTATTTTTCATTACTCTCGATGGAAATTCTGTAGATTTGCATTATTGTAGTAATATTTATGTTAGTTTTTAAATGTAATATTTATATAAATAATAATATATTTAAATTATTATAATAATTATATAATAATATTATATATATGATAATATAAATACATAATTATTTTTAAAATTTATATATATAAATAATATATTTTAATTAATATAATAATTGTAATATATATATATATATATATATATATATATATATATAATTTTAAATGTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570093 lncRNA downstream 134450 18162350 ~ 18166938 (-) True G497044
TU570161 lncRNA downstream 236303 18064125 ~ 18065085 (-) False G497105
TU570162 lncRNA downstream 236303 18064125 ~ 18065085 (-) True G497105
TU570150 lncRNA downstream 250202 18050728 ~ 18051186 (-) False G497099
TU570230 lncRNA upstream 107232 18411280 ~ 18411572 (-) True G497171
TU570232 lncRNA upstream 110425 18414473 ~ 18414707 (-) True G497173
TU570237 lncRNA upstream 114705 18418753 ~ 18419030 (-) True G497177
TU570249 lncRNA upstream 176317 18480365 ~ 18481338 (-) True G497188
TU570263 lncRNA upstream 224279 18528327 ~ 18530628 (-) True G497200
CI01000340_18228042_18229807.mRNA mRNA downstream 71581 18227175 ~ 18229807 (-) True CI01000340_18228042_18229807
CI01000340_18185156_18206837.mRNA mRNA downstream 94551 18184910 ~ 18206837 (-) True CI01000340_18185156_18206837
CI01000340_18091595_18104080.mRNA mRNA downstream 197308 18090808 ~ 18104080 (-) True CI01000340_18091595_18104080
CI01000340_18030360_18041157.mRNA mRNA downstream 260231 18030245 ~ 18041157 (-) True CI01000340_18030360_18041157
CI01000340_18013773_18027276.mRNA mRNA downstream 274112 18013531 ~ 18027276 (-) True CI01000340_18013773_18027276
CI01000340_18408556_18408855.mRNA mRNA upstream 104474 18408522 ~ 18408855 (-) True CI01000340_18408556_18408855
CI01000340_18419431_18419838.mRNA mRNA upstream 115010 18419058 ~ 18421201 (-) False CI01000340_18419431_18419838
CI01000340_18482872_18484601.mRNA mRNA upstream 177301 18481349 ~ 18485055 (-) False CI01000340_18482872_18484601
CI01000340_18485385_18491222.mRNA mRNA upstream 180799 18484847 ~ 18491593 (-) True CI01000340_18485385_18491222
CI01000340_18540426_18543271.mRNA mRNA upstream 236213 18540261 ~ 18544300 (-) True CI01000340_18540426_18543271
TU569877 other downstream 1058649 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 1255700 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 1781414 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2121303 16179988 ~ 16180085 (-) True G495611
TU568273 other downstream 2688825 15606741 ~ 15612563 (-) True G495475
TU570236 other upstream 115270 18442995 ~ 18454680 (-) True G497176
TU570552 other upstream 854821 19158869 ~ 19164472 (-) False G497442

Expression Profile