RNA id: CI01000340_18587476_18607063.mRNA



Basic Information


Item Value
RNA id CI01000340_18587476_18607063.mRNA
length 1689
RNA type mRNA
GC content 0.47
exon number 10
gene id CI01000340_18587476_18607063
representative False

Chromosome Information


Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18587330 ~ 18607133 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGATAAAATGTGTCTGACAGCTGACAGTGTGTATGCATGCATTCAAGACAGCGCCGCAGGTAGACGCGCCATGACAGAACACTGTCAAGAGGATCAGACACGCAGAACGAAACTCTTCCTCCAGCAGCTGAAGGGTGTGGATCTGCTTCAATCACACACACATGTACCTGAACACTTCATGAAGCATTTAAAGGTCACAAAAACTCTCACAAATGCACCTGATCAAAAGAGAAGCTCAAATGCCACTGAAGCCTTGCTGTTTAAAGGACAGCGTCTTCAACAGGTTCCTGCAGTGATTCCCGGGGAAATAAGTTCTAGCGGCAGAATCCATGGTGACGTGTACGTGCTTACTTACCGCGCGCCGAAAGCCGTTATATTCCAAATGTATATCGCGGGAAATTGCTTTGCTCCGTATCGATTTGTTCTGCAGGCTGAACAGGCCTGTGAGGGTCCAAATGTGCACTTCATCAAGGCATCCCATCGAGACCTTCAGCATACTTCACGCAACTCTGAGCATGTTTTGAAGGGTTTTTTGGCTGTAAAATCAGACCCAGCAGTGCTGCTGAATGAGGCTAATGCATGTGCTGATAATATAATGCTGAAACAATCCAGCAGAGATTTGTTAAAAATATCCCTGTTGAAACAGAGGCTTTGTGTGACAAAACCTGCCAGTGTTCACCTGCTCTGTGCTTCTGACCACGAGAAACAGAGTTTATATCAGGAAGAGCAACACAAACTCCTCATCAGACCATCATATGAAGCTGCGGTGGATTCAGAGCTCACGTGCAGGACTGAGCTGCTGAATGAGGCTAATGCATGTGCTGATAATATAATGCTGAAACAATCCAGCAGAGATTTGTTAAAAATATCCCTGTTGAAACAGAGGCTTTGTGTGACAAAACCTGCCAGTGTTCACCTGCTCTGTGCTTCTGACCACGAGAAACAGAGTTTATATCAGGAAGAGCAACACAAACTCCTCATCAGACCATCATATGAAGCTGCGGTGGATTCAGAGCTCACGTGCAGGACTGAGGTGGAGCGCAGCCAACAGCGCAGCATCAGCGGTGTTAAAGCATCTCACGGACACCGGACGCGTGGAGAGCTCCTCTCGCAGCAGGCGTCAGTCTCTCTGAAGCGGCTTTCACACGAGACTCTGAATCTGGAGAAACCTGCCAAACAGAAGATCAGTATGATCAGGATGCTGGGCTGCGGCGACGTTCCTGTGCGGAGCGTTCTGGCTCTGATGTGTTTACATGCCGAGGAGATTACAGGCGCTCGACGCGTCCATCTGCTGCTTCCTGCCCTCCGCGGTTCCAGCGGCCCGAAGAACCAGAGCAGGATGCTGTGGGTGAAAAACGCGGGACGGCTGCTGGGCTCGGGCAAAACGGCTGGACGCGTTCCTGCCAGTGAAATATTTATTGCAAAGCTGCTGTTTGTCAGTATGTCCTTGGTTATATTTGAGATATTTCTAGTCTTGTTTTTTAGTGTAAATTTATCAGTCATTTTTGGTGCTGTGATTGTAAAAATAAATGATACAATCTAATAGTTATCATAAACAGCATATAATGCCTATAAGCAGCTTTAATATAGCTGAAGTCAGTCTAGCTTGTAGTGAAGTTCACTTGTTTGTAATGGCAGCCTGTAACCTTTAGTGTTCACTCTGTGCTTTTGTTCTCTCGCTCTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU570272 lncRNA downstream 39933 18546952 ~ 18547397 (-) True G497209
TU570263 lncRNA downstream 56702 18528327 ~ 18530628 (-) True G497200
TU570249 lncRNA downstream 105858 18480365 ~ 18481338 (-) True G497188
TU570237 lncRNA downstream 168300 18418753 ~ 18419030 (-) True G497177
TU570232 lncRNA downstream 172623 18414473 ~ 18414707 (-) True G497173
TU570327 lncRNA upstream 38364 18645497 ~ 18646467 (-) True G497251
TU570328 lncRNA upstream 40649 18647782 ~ 18712131 (-) True G497252
TU570302 lncRNA upstream 62079 18669212 ~ 18670303 (-) True G497229
TU570337 lncRNA upstream 80075 18687208 ~ 18687507 (-) True G497257
TU570351 lncRNA upstream 126530 18733663 ~ 18811168 (-) False G497271
CI01000340_18572454_18585230.mRNA mRNA downstream 2100 18572454 ~ 18585230 (-) True CI01000340_18572454_18585230
CI01000340_18540426_18543271.mRNA mRNA downstream 43030 18540261 ~ 18544300 (-) True CI01000340_18540426_18543271
CI01000340_18485385_18491222.mRNA mRNA downstream 95737 18484847 ~ 18491593 (-) True CI01000340_18485385_18491222
CI01000340_18482872_18484601.mRNA mRNA downstream 102275 18481349 ~ 18485055 (-) False CI01000340_18482872_18484601
CI01000340_18419431_18419838.mRNA mRNA downstream 166129 18419058 ~ 18421201 (-) False CI01000340_18419431_18419838
CI01000340_18654497_18656059.mRNA mRNA upstream 47317 18654450 ~ 18656059 (-) True CI01000340_18654497_18656059
CI01000340_18706881_18719031.mRNA mRNA upstream 98938 18706071 ~ 18719031 (-) True CI01000340_18706881_18719031
CI01000340_18871236_18880189.mRNA mRNA upstream 263811 18870944 ~ 18880189 (-) True CI01000340_18871236_18880189
CI01000340_18900583_18906154.mRNA mRNA upstream 292544 18899677 ~ 18906154 (-) True CI01000340_18900583_18906154
CI01000340_19062314_19072746.mRNA mRNA upstream 453952 19061085 ~ 19072746 (-) True CI01000340_19062314_19072746
TU570236 other downstream 132650 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 1344591 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 1541642 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2067356 16519911 ~ 16519974 (-) True G496628
TU568418 other downstream 2407245 16179988 ~ 16180085 (-) True G495611
TU570552 other upstream 551736 19158869 ~ 19164472 (-) False G497442

Expression Profile