Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00020475 |
| length | 2419 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 15 |
| gene id | XLOC_010417 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 6182501 ~ 6205790 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003094 | glomerular filtration | biological_process |
| GO:0048262 | determination of dorsal/ventral asymmetry | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:2000055 | positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0000578 | embryonic axis specification | biological_process |
| GO:0007398 | ectoderm development | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0060026 | convergent extension | biological_process |
| GO:0007155 | cell adhesion | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005902 | microvillus | cellular_component |
| GO:0005912 | adherens junction | cellular_component |
| GO:0005915 | zonula adherens | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005938 | cell cortex | cellular_component |
| GO:0014704 | intercalated disc | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016342 | catenin complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0035257 | nuclear hormone receptor binding | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0003713 | transcription coactivator activity | molecular_function |
| GO:0019903 | protein phosphatase binding | molecular_function |
| GO:0045294 | alpha-catenin binding | molecular_function |
| GO:0045296 | cadherin binding | molecular_function |
| id | description |
|---|---|
| ko04015 | Rap1 signaling pathway |
| ko04310 | Wnt signaling pathway |
| ko04390 | Hippo signaling pathway |
| ko04510 | Focal adhesion |
| ko04520 | Adherens junction |
| ko04550 | Signaling pathways regulating pluripotency of stem cells |
| ko04670 | Leukocyte transendothelial migration |
| ko04919 | Thyroid hormone signaling pathway |
| ko04916 | Melanogenesis |
| ko05200 | Pathways in cancer |
| ko05205 | Proteoglycans in cancer |
| ko05210 | Colorectal cancer |
| ko05225 | Hepatocellular carcinoma |
| ko05226 | Gastric cancer |
| ko05216 | Thyroid cancer |
| ko05217 | Basal cell carcinoma |
| ko05215 | Prostate cancer |
| ko05213 | Endometrial cancer |
| ko05224 | Breast cancer |
| ko05160 | Hepatitis C |
| ko05163 | Human cytomegalovirus infection |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05165 | Human papillomavirus infection |
| ko05132 | Salmonella infection |
| ko05100 | Bacterial invasion of epithelial cells |
| ko05010 | Alzheimer disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko05418 | Fluid shear stress and atherosclerosis |
| ko05412 | Arrhythmogenic right ventricular cardiomyopathy |
| ko04934 | Cushing syndrome |
| id | description |
|---|---|
| ZDB-GENE-980526-362 | Enables cadherin binding activity. Involved in positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification. Acts upstream of or within several processes, including determination of dorsal/ventral asymmetry; ectoderm development; and glomerular filtration. Located in several cellular components, including intercalated disc; microvillus; and zonula adherens. Part of catenin complex. Is expressed in several structures, including EVL; adaxial cell; brain; germ ring; and gonad. Human ortholog(s) of this gene implicated in several diseases, including autosomal dominant non-syndromic intellectual disability 19; exudative vitreoretinopathy 7; hepatocellular carcinoma (multiple); reproductive organ cancer (multiple); and urinary system cancer (multiple). Orthologous to human CTNNB1 (catenin beta 1). |
| ensembl_id | ENSDART00000167505 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00022087 | lncRNA | downstream | 397443 | 5746308 ~ 5786042 (-) | False | XLOC_010414 |
| TCONS_00022088 | lncRNA | downstream | 397482 | 5776049 ~ 5786003 (-) | True | XLOC_010414 |
| TCONS_00022086 | lncRNA | downstream | 539747 | 5636286 ~ 5643738 (-) | True | XLOC_010411 |
| TCONS_00022085 | lncRNA | downstream | 594865 | 5580715 ~ 5588620 (-) | True | XLOC_010409 |
| TCONS_00022084 | lncRNA | downstream | 594919 | 5453180 ~ 5588566 (-) | False | XLOC_010409 |
| TCONS_00022089 | lncRNA | upstream | 49480 | 6248023 ~ 6249246 (-) | True | XLOC_010418 |
| TCONS_00022091 | lncRNA | upstream | 92630 | 6291173 ~ 6351508 (-) | False | XLOC_010419 |
| TCONS_00022090 | lncRNA | upstream | 92630 | 6291173 ~ 6351508 (-) | False | XLOC_010419 |
| TCONS_00022093 | lncRNA | upstream | 92630 | 6291173 ~ 6351690 (-) | False | XLOC_010419 |
| TCONS_00022092 | lncRNA | upstream | 92630 | 6291173 ~ 6351690 (-) | True | XLOC_010419 |
| TCONS_00020470 | mRNA | downstream | 309619 | 5786770 ~ 5873866 (-) | False | XLOC_010415 |
| TCONS_00020471 | mRNA | downstream | 338604 | 5800580 ~ 5844881 (-) | False | XLOC_010415 |
| TCONS_00020469 | mRNA | downstream | 462099 | 5717760 ~ 5721386 (-) | True | XLOC_010413 |
| TCONS_00020468 | mRNA | downstream | 511623 | 5650495 ~ 5671862 (-) | True | XLOC_010412 |
| TCONS_00020467 | mRNA | downstream | 571005 | 5607138 ~ 5612480 (-) | True | XLOC_010410 |
| TCONS_00020476 | mRNA | upstream | 157917 | 6356460 ~ 6377672 (-) | True | XLOC_010420 |
| TCONS_00020477 | mRNA | upstream | 188398 | 6386941 ~ 6391275 (-) | False | XLOC_010422 |
| TCONS_00020478 | mRNA | upstream | 196768 | 6395311 ~ 6424818 (-) | False | XLOC_010423 |
| TCONS_00020479 | mRNA | upstream | 197404 | 6395947 ~ 6424816 (-) | True | XLOC_010423 |
| TCONS_00020489 | mRNA | upstream | 604927 | 6803470 ~ 6821927 (-) | False | XLOC_010429 |
| TCONS_00020473 | other | downstream | 312796 | 5870573 ~ 5870689 (-) | True | XLOC_010416 |
| TCONS_00020472 | other | downstream | 325504 | 5821297 ~ 5857981 (-) | True | XLOC_010415 |
| TCONS_00020459 | other | downstream | 1076068 | 5107298 ~ 5107417 (-) | True | XLOC_010405 |
| TCONS_00020457 | other | downstream | 1121856 | 5061499 ~ 5061629 (-) | True | XLOC_010404 |
| TCONS_00020450 | other | downstream | 1464100 | 4712664 ~ 4719385 (-) | True | XLOC_010400 |
| TCONS_00020493 | other | upstream | 630009 | 6828552 ~ 6829635 (-) | True | XLOC_010430 |
| TCONS_00020500 | other | upstream | 1021449 | 7219992 ~ 7228279 (-) | True | XLOC_010432 |
| TCONS_00020506 | other | upstream | 1495338 | 7693881 ~ 7696211 (-) | False | XLOC_010438 |
| TCONS_00020507 | other | upstream | 1496251 | 7694794 ~ 7696216 (-) | True | XLOC_010438 |
| TCONS_00020521 | other | upstream | 2089228 | 8287771 ~ 8288447 (-) | True | XLOC_010447 |
