RNA id: CI01000340_19280383_19285904.mRNA


Basic Information

Item Value
RNA id CI01000340_19280383_19285904.mRNA
length 2158
RNA type mRNA
GC content 0.53
exon number 13
gene id CI01000340_19280383_19285904
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19280228 ~ 19285904 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTGATGAAACTGGATTTTCAGTGTGTGAAAAACAACACTGATCATCACACAAATGAAATCACGGTGGAGCGTCTGATCATCCGCAGAGGAAAAGCCTTCAGTCTGATCCTCAGCGGCGAGCGTCTGCCTCCAGACGACATCGAGATGACTGTGGAGACGGGTCCGGGCGCGAGTGAACAGAAGTGCACACGCTCGTCCTTCAGCACTAACCCGCAGCGCTGCTCTACTCCCGACGCCTGCATCGGCCTGTACTCGCTGTCGGTCAGGAGCGGCTCCTGCTCCATCCGGTGTGAGAGAGCCATCACGGTGCTGTTCAACCCCTGGTGTGAAGATGACTGGGTGTATCTGCCGAACGAAGCGGAGAGGCAGGAATACGTCATGAATGAACAGGGAATCGTGTATAAGGGAGTGGATGAATACATCACCAGCATGAGCTGGGACTTCGGTCAGTTTGAGGAAGATATAGTGGATATCTGTCTGACGATGCTGGATTTGAACCCGAAGTGTCTGAAAGACGCACAGGAGGATTATTCGGCGCGCTGTAACCCCATCTACATCGGTCGAGTGGTCAGCGCCATGATAAACTCAGACGATGATAAGGGTGTTCTGATGGGTCAGTGGGGCGATCGGTACATCGGAGGAGTCGTTCCGTCCAACTGGAGCAGCAGTGTGGAAATATTGAGACGCTGGATCAAATATGACTGTCATCCGGTCAAATACGGACAGTGCTGGGTGTTTGCAGCGGTCATGTGCACAGTGTTGAGATGTTTGGGGATCCCGTGTCGCGTCGTCACTAACTTTCAGTCGGCTCACGACACGGATCAGAACCTCATCATTGACGAGTACTTCAGCGACTACGGCGTGAGACCCAAACAAAACCTGGACAGTGTTTGGAACTACCATGTTTGGGTGGAGGGCTGGATGAGGCGTCCGGATCTCTCCAAGGACTCGTTCTACGACGGCTGGCAGGTTCTGGACCCGACGCCGCAGGAGAAGAGCTCAGGCACTTACTGCTGCGGTCCAGCGCCTGTGAAGGCCATCCTGGAGGGTCACACCGACGTCAAGTACGACGTGCCTTTTGTGTACTCAGAGGTCAACGCAGATAAAATCACATGGTTGGTCATGGCCAACGGCTCCAAGAAGATTATTCACTCAGACACGAAAACTGTCGGGCAGAATATCAGCACTAAAGCCGTGGGCAGCAACAGCAGACAAGACATCACAAATCAGTACAAGCACCCGGAGGGTTCTGTGAAGGAGAGAGCCGTGTATGACGAGGCCGTGAAGCGAGTGACTGACCTGAAGCCGAGCGAGACGCCTCGTCCAACCCTACAGATGAAGATCAGTCTGGACGAGCCGCCGCTGAACGGCACCGACATCAAACTCAAGCTCATTCTGAAGAGCGAGAGCGCACAAGATCTGTCGCTCAAGATGAGCGCTCAGGTCATGAGATACACGGGAAGCCCAGTGGCCGGCGTCTGGAGCGACTCCACTGACATCCAACTGCAACCCAACACAGAACAAATTCTTCCCTTCATGGTCCCGTTCGCTGCATACGGACCAAAAATGCTGGACAACAACTGCATCAAAGTGTCTGTGATCTCAACGGGAAAAAACGAGCCGAAAGAGACGTATCTGGCGGAGAAAGACATCGTGCCACACAGCCCGACCCTCAAGATCTCTGTGAGCGGGACTCCTCTATGGGACGCTGAGATGAACGCAGAGGTCGTGTTTGAGAACCCTCTCCCCACGGTGCTGAAGAACTGCTCCATCACGCTCACCGGCAGCGGCCTGCTGAAACAAACCGAGAAGTCCAACGCCGTTGAGCTCGGCCCGGGACAGAGAATCACTCTGAGGGTGACGTTCAGACCCTACAGACTCGGACCGAGGAAACTGGTGGCCAACTTTGACAGCTCCACCTTCAAAGACATTAAAGCCAGTCTGGACATCAACGTCAGACCCGCGAGCTCACCTCTGGGATACCTCAACTTCAGCAAATGAGACGACTGGGAAGAACGAAGAATCAGCTGCACGAAGCTTTTATTTGCATGAACAGCAGCCATGTACAACACAGAGATGTTCTATCATTTAAAGAGCTCATTTGTGCTGTTATAATGAAAATAATTAACAGTAATCTAATGATTATCACCATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570554 lncRNA downstream 111853 19168075 ~ 19168375 (-) True G497444
TU570549 lncRNA downstream 113450 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA downstream 113450 19165863 ~ 19166778 (-) True G497442
TU570547 lncRNA downstream 124971 19154833 ~ 19155257 (-) True G497440
TU570500 lncRNA downstream 192600 19086428 ~ 19087628 (-) True G497393
TU570450 lncRNA upstream 20339 19306243 ~ 19363326 (-) True G497343
TU570482 lncRNA upstream 129549 19415453 ~ 19420039 (-) True G497375
TU570448 lncRNA upstream 143457 19429361 ~ 19431737 (-) True G497341
TU570457 lncRNA upstream 162535 19448439 ~ 19451285 (-) True G497350
TU570458 lncRNA upstream 206020 19491924 ~ 19494481 (-) True G497351
CI01000340_19267148_19271146.mRNA mRNA downstream 9082 19266637 ~ 19271146 (-) True CI01000340_19267148_19271146
CI01000340_19254583_19259959.mRNA mRNA downstream 20269 19254226 ~ 19259959 (-) True CI01000340_19254583_19259959
CI01000340_19247600_19253297.mRNA mRNA downstream 26931 19247473 ~ 19253297 (-) True CI01000340_19247600_19253297
CI01000340_19231651_19244239.mRNA mRNA downstream 35264 19230891 ~ 19244964 (-) True CI01000340_19231651_19244239
CI01000340_19213032_19215967.mRNA mRNA downstream 63608 19212361 ~ 19216620 (-) True CI01000340_19213032_19215967
CI01000340_19288790_19292748.mRNA mRNA upstream 2192 19288096 ~ 19293397 (-) True CI01000340_19288790_19292748
CI01000340_19323506_19324456.mRNA mRNA upstream 37602 19323506 ~ 19325011 (-) True CI01000340_19323506_19324456
CI01000340_19326355_19328820.mRNA mRNA upstream 39730 19325634 ~ 19329321 (-) True CI01000340_19326355_19328820
CI01000340_19335733_19340791.mRNA mRNA upstream 49750 19335654 ~ 19340791 (-) True CI01000340_19335733_19340791
CI01000340_19346357_19355278.mRNA mRNA upstream 60000 19345904 ~ 19355278 (-) True CI01000340_19346357_19355278
TU570552 other downstream 115756 19158869 ~ 19164472 (-) False G497442
TU570236 other downstream 825548 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 2037489 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2234540 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2760254 16519911 ~ 16519974 (-) True G496628

Expression Profile