RNA id: CI01000340_19346357_19355278.mRNA


Basic Information

Item Value
RNA id CI01000340_19346357_19355278.mRNA
length 2059
RNA type mRNA
GC content 0.55
exon number 12
gene id CI01000340_19346357_19355278
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 19345904 ~ 19355278 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGAGTGAAGAGTTCAGCCGTCACGACCCCTGTGAAGAGCCCGAGCCGGAGTGAAAGCGTGTCCGTCTCCACACTGGTGTCCACGTCCTCAACGCCGTCCGCTCAGACGACCGTCACAAACACTAAAACATCCTCCTGGAGGCTGGACGAGACTCCAATCACGAGACCCGCAGAGAAACCCTTAGCGAGTCCAAAGCTGAGTGATGTCAGTTATTCTCCATCAGCCGTGACCGTGAACACGCGCTACACCTATCAGACTCCCAGCGCTCCACTGGATGATCTCGCTGACGCTTTATTGCCGAGTCTGTCTGGAGGTGTGCAGTCACAGCCTGTCAGATCACAAACGCAAGTCAAGACGGTTTATACGGAGATTCCCGCTGCGTCACCGACTCTACGCTCTCCTCTACAGACGACACTGGAGTCCTCCAGCAGAACGCAAGTCAAGACGGTTTATACAGAGATTCCCGCTGCGTCACCGACTCTACGCTCTCCTCTACAGACGACACTGGAGTCCTCCAGCAGGTCCGTCAGCAGTCGGGATGTGTGTACGGTCTGTGGGAAACCCATCGCTGGAGCAGAGAGGATGATTCTAGAAGAGCTAAAGATCATCAGCCACACGTCCTGCTTCAGGGCGGCGGTGCTGAAGCCGCAGATGATGGCGGATGTTCGCGCCGAGCTGGAGGTGCAGAAACTGCAGGAGCTCGTGCGGAAACTGGAGCGGCAGAACGAGCAGCTGCGGACGCGCGCGAACATCGTGCCGCCCTCGCCGGCGTGCCTGCGCGCGGGCTCCTGCTGCATCCCGAGTCCGGCGCCGAGCCTCGCGTGTCAGTACTTCCCGCCGGACGATCCCTTCCCGTATTTCCAGCCGCATTCCGCCGCGGATGAGGATGATGAGGATGATGAAGAGGACGACGAGCCGCGCGCGCTCCTGGACGAGCTGATGCTTCTGGACCTGGAGACCGTGAGTCCGAGCGGCGAGTCCGAGGAGACCTGGCTCTATGTGTCTCCCAGCTCTCATCTGTGGTCCGGCGCGGGTCTGAACGCTCTTCAGTGGTGTCGACATGTTCTAGATCAGATGGAAACCAGCAGAAACTCGCTCTGCCCAAGACTGGAGCCCGGTCGCAGCGTTCGGCGCAGTGTGTTCGCTCAGGCATCAGTGGACAGCGATGTGAGCGTGTCTGAGCTGGACGACGACTCCGTTACTCTGGGTTATAAACTGCAGGACCTGACGGACGTCCAGGTGATGGCGCGACTGCAGGAGGAGAGTCTGCGTCAGGACTTCGCCACCACCTCTTCTTCCTCCTCTAATAACCGCCGCAGCGCCAGCTTCTCCTTCCAGTTCGGCCCGCGCAGCGATTCGCACCTGGACGAGGAAGAGGAGGATGAGGATGAAGACTACGGTCAGTTGCCGCCACCGCAGCCGCGTCTGAGTCGCGCCGGAGCCCTGCAGCGCGGCCTGCCGCATTCACACACCTTCAGCAGCATCAGGGACTGGAGGAGCAGCAGCACGTCACCCTGCAGCGCGGCGCAGACGCAGACACCTGCGCAGACGCCTGCCAGCGAGACACACGGCCTCAGGAGCAGCTCAGGTGATTATCATGATTAACTGCATCTGTGTGTCCTGGGGTCAGAAATGATGTGTTTTGAATGGAGATGATATACACTACTGTACAAAAGTTTGTATTTTTGTAAAGAAAATTAAATTAAGACATTTATAATGTTACAAAAAAATCTATTTTAAATAAATGCTGACAAATGCTGAAAGAGACTCTTTCAGAAACATTAAAACATCTGAATTATTCCCAACTTTTGACTGCTACTGTGATTTTCAAGGGTGAATCTTCAGCCTCATATAGTGTGACGTTTATAACAATATTCTGTTGAACTAGAGCTGATGGTTGTTGAAGATGTTGGGACTGTTTTTACCCATAAGCCCCAGACTGACCTGGATGTTCTACTTCCTGTGTGTGTTTACGTGTGTGTGTGTGTGTGTGTCGTGTTTGTAATTCTCCGGCCATCAACTGTGGAAATCAGTTGAATATGAGAGTAAGTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU570554 lncRNA downstream 177529 19168075 ~ 19168375 (-) True G497444
TU570549 lncRNA downstream 179126 19160236 ~ 19166778 (-) False G497442
TU570551 lncRNA downstream 179126 19165863 ~ 19166778 (-) True G497442
TU570547 lncRNA downstream 190647 19154833 ~ 19155257 (-) True G497440
TU570500 lncRNA downstream 258276 19086428 ~ 19087628 (-) True G497393
TU570482 lncRNA upstream 60175 19415453 ~ 19420039 (-) True G497375
TU570448 lncRNA upstream 74083 19429361 ~ 19431737 (-) True G497341
TU570457 lncRNA upstream 93161 19448439 ~ 19451285 (-) True G497350
TU570458 lncRNA upstream 136646 19491924 ~ 19494481 (-) True G497351
TU570594 lncRNA upstream 148523 19503801 ~ 19550929 (-) True G497479
CI01000340_19335733_19340791.mRNA mRNA downstream 5113 19335654 ~ 19340791 (-) True CI01000340_19335733_19340791
CI01000340_19326355_19328820.mRNA mRNA downstream 16583 19325634 ~ 19329321 (-) True CI01000340_19326355_19328820
CI01000340_19323506_19324456.mRNA mRNA downstream 20893 19323506 ~ 19325011 (-) True CI01000340_19323506_19324456
CI01000340_19288790_19292748.mRNA mRNA downstream 52507 19288096 ~ 19293397 (-) True CI01000340_19288790_19292748
CI01000340_19280383_19285904.mRNA mRNA downstream 60000 19280228 ~ 19285904 (-) True CI01000340_19280383_19285904
CI01000340_19382181_19383365.mRNA mRNA upstream 26694 19381972 ~ 19383454 (-) True CI01000340_19382181_19383365
CI01000340_19456344_19458688.mRNA mRNA upstream 100753 19456031 ~ 19458688 (-) True CI01000340_19456344_19458688
CI01000340_19512374_19526344.mRNA mRNA upstream 155243 19510521 ~ 19526344 (-) True CI01000340_19512374_19526344
TU570552 other downstream 181432 19158869 ~ 19164472 (-) False G497442
TU570236 other downstream 891224 18442995 ~ 18454680 (-) True G497176
TU569877 other downstream 2103165 17177492 ~ 17242739 (-) True G496853
TU569869 other downstream 2300216 17043723 ~ 17045688 (-) True G496845
TU569607 other downstream 2825930 16519911 ~ 16519974 (-) True G496628

Expression Profile