RNA id: TU557409


Basic Information

Item Value
RNA id TU557409
length 513
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G485753
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 47552 ~ 48064 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTACAACAGGCAGCAAAATAGCTGTAGCTGCAGCCAATCACATGGTTGCAAACTAAGGAAAAATAAACAACATACAAAAAACTAAAGATAGATGTAAAATATATGCAAAATACAAATGATACAACCCACAAAATACACAAATAAACCTTGAACACAATACAATATAAGGAAAAATATACTCCACCACATGGAATTTACAACATATGAAATAATATCAGAAATACGAAACCATCCATCAAAAATAACTGCACATATACGTTAGTAAACCTCTCTAACAACAATATATCTCTTTATATAACACGGATGGTCAAAATAATCATATACATTTATAAGATAACAAAGAGCAGGGAAGACCCTCCTTACCTTGTCACAAAGGAAGAGCATTGTGACCAACAACAGCTCCACCCATGTAAAGAGGGCACAATCAAACAATGAAACACAGCTCCCCCCTGCTGCTGGAAGAACATATTACATCTTCCCCACAAATATAATAAAATATTTTTAATTATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU556955 lncRNA downstream 27320 19983 ~ 20232 (-) True G485360
TU557399 lncRNA upstream 9819 57883 ~ 60043 (-) False G485744
TU557400 lncRNA upstream 9819 57883 ~ 58639 (-) True G485744
TU557401 lncRNA upstream 12121 60185 ~ 118368 (-) True G485745
TU557434 lncRNA upstream 58821 106885 ~ 113896 (-) True G485771
TU557438 lncRNA upstream 93147 141211 ~ 141449 (-) True G485775
CI01000340_00035016_00043632.mRNA mRNA downstream 3518 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00031137_00033754.mRNA mRNA downstream 13798 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 19722 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00062787_00080635.mRNA mRNA upstream 14716 62780 ~ 80972 (-) False CI01000340_00062787_00080635
CI01000340_00095106_00097863.mRNA mRNA upstream 46982 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00100271_00103531.mRNA mRNA upstream 51984 100048 ~ 103531 (-) True CI01000340_00100271_00103531
CI01000340_00145063_00147754.mRNA mRNA upstream 96462 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 102471 150535 ~ 155343 (-) True CI01000340_00151447_00155343
TU557403 other upstream 31351 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 277270 325334 ~ 325716 (-) False G485786
TU557450 other upstream 277270 325334 ~ 325663 (-) True G485786
TU557495 other upstream 738487 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1847737 1895801 ~ 1902272 (-) True G487884

Expression Profile