RNA id: TCONS_00020476


Basic Information

Item Value
RNA id TCONS_00020476
length 1605
RNA type mRNA
GC content 0.38
exon number 11
gene id XLOC_010420
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6356460 ~ 6377672 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCCACATCTGCAGTTGCTCCCACCGAGCACAGATCACATTACTCTTTCTACATCactctgttttttctttttccatcATGGACAGTGCTTTTGCCAACCTAGATGCTGCCGGGTTTCTACAGATCTGGCAGCACTTTGATGCTGATgACAATGGCTACATTGAAGGGAAAGAGCTGGATGACTTTTTCCGTCACATGCTGAAGAAACTACAGCCAAAGGATAAGATAACAGATGAGAGAGTGCAGCAAATAAAGAAGAGTTTCATGTCTGCCTACGATGCCACATTCGACGGACGCTTGCAGATCGAGGaaCTGGCCAATATGATCCTGCCGCAGGAAGAGAACTTCCTTCTGATCTTTCGCAGAGAGGCTCCATTAGATAACAGTGTGGAGTTCATGAAGATCTGGAGGAAATATGATGCTGACAGCAGTGGTTACATCTCAGCTGCGGAGCTCAAGAATTTCTTAAAGGACCTGTTTCTGCAGCACAAAAAGAAGATTCCTCCTAATAAATTGGACGAGTACACGGATGCCATGATGAAGATTTTTGACAAAAACAAGGATGGCAGATTGGATCTTAATGACTTAGCGAGAATTCTGGCTCTACAAGAGAACTTCCTGTTGCAGTTCAAAATGGATGCCAGCAGTCAAGTGGAAAGAAAAAGAGACTTCGAGAAGATCTTTGCACACTACGATGTTAGTAGGACTGGAGCACTTGAAGGACCAGAGGTGGACGGCTTTGTCAAAGACATGATGGAACTAGTAAGGCCCTCTATCAGTGGAGGGGATCTGGATAAGTTCCGTGAATGTCTGCTAACTCACTGTGACATGAATAAAGACGGGAAGATTCAGAAGAGCGAGCTGGCCCTGTGTTTGGGACTGAAACATAAGCCGTAGTCCTCACATATACACTCAAGTTCTCCATTTTAGATTACTAGATTTAGAAATCTTTGTTGTGTGTATTGCTCATCTCTCAGTTTgcaaaatatattattgttaatttaatttaagtatatTTAATGCATTCAAAACTGTCAACTTTTGCAAGAATaagatatgtacagttgaagtctaaattattagcccctctgtatatttttcacccaagttctgtttaacagagattatttcaacacatttctaaacataatagttttaattacttatttctttgccatgatgacagtacatactattttactagatatttttcaagatactagtattcagcttaaagtgtcatttaaaggcctaactaggataattaggcaagttaggataattaggcaagtcggtaatgatggtttgttctgtagactatcaaaaaaaaaaaatattacttaaggggctaataataatattgaccttaaaaatgtttttatttattttttttttattaaaactgcttttattttagccgacaaagaagaaagaaaaaaatattatcagacatactgtgaaaacttccttgctctgataaacagcatttgggattttttttttaatcaaaggagagcgaataattttgacctcaactgtatgtgttAAAAATGTGAAGACTAATACAGTAGTGGTTTCTTCAATAAACGCTACATGTGTGAACTG

Function

GO:

id name namespace
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:1900271 regulation of long-term synaptic potentiation biological_process
GO:0099509 regulation of presynaptic cytosolic calcium ion concentration biological_process
GO:0007420 brain development biological_process
GO:0043005 neuron projection cellular_component
GO:0030425 dendrite cellular_component
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-041010-82 Predicted to enable calcium ion binding activity. Acts upstream of or within brain development. Predicted to be located in cytoplasm. Predicted to be active in several cellular components, including cytosol; dendrite; and terminal bouton. Orthologous to human SCGN (secretagogin, EF-hand calcium binding protein).

Ensembl:

ensembl_id ENSDART00000081649

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022093 lncRNA downstream 4770 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00022092 lncRNA downstream 4770 6291173 ~ 6351690 (-) True XLOC_010419
TCONS_00022091 lncRNA downstream 4952 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022090 lncRNA downstream 4952 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022089 lncRNA downstream 107214 6248023 ~ 6249246 (-) True XLOC_010418
TCONS_00022094 lncRNA upstream 5858 6383530 ~ 6386642 (-) True XLOC_010421
TCONS_00021781 lncRNA upstream 9955 6387627 ~ 6391279 (-) True XLOC_010422
TCONS_00022095 lncRNA upstream 98344 6476016 ~ 6476727 (-) False XLOC_010424
TCONS_00022097 lncRNA upstream 98344 6476016 ~ 6484227 (-) False XLOC_010424
TCONS_00022096 lncRNA upstream 98344 6476016 ~ 6484227 (-) True XLOC_010424
TCONS_00020474 mRNA downstream 150670 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020475 mRNA downstream 157917 6183485 ~ 6198543 (-) True XLOC_010417
TCONS_00020470 mRNA downstream 482594 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020471 mRNA downstream 511579 5800580 ~ 5844881 (-) False XLOC_010415
TCONS_00020469 mRNA downstream 635074 5717760 ~ 5721386 (-) True XLOC_010413
TCONS_00020477 mRNA upstream 9269 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020478 mRNA upstream 17639 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA upstream 18275 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020489 mRNA upstream 425798 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 425873 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020473 other downstream 485771 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 498479 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1249043 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1294831 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1637075 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 450880 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 842320 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1316209 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1317122 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1910099 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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