RNA id: TU557400


Basic Information

Item Value
RNA id TU557400
length 757
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G485744
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 57883 ~ 60043 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTATCAGGGATGGAGCTAAACTCTGCAGGACAGTGGGCCTCCAGGATTGAAGGTGCCCATCCCTGAGCTAATTAGTAGACACTCTAAGACCTAAAATGGGTGTGTCAGACAAAGAAGACATTCAAAATGTCCAGTGTTGGGAGGCTTGAGCAACAGGTTTGAGATGTTTTACTGGAACATTGTTTTCTCACATACAGTTTAAAATATAACAAAATATTTGGATTCATGACATGAATGTTTGATATTTTAAATGAATCACTTCTATTTGTCATCCTCAGGTGAAAGGGTGTTGGGGGAACAGGAAATACACACGATCAAATCCACCCTCAGACTTATAATGAGATGAAATGGAGAAAATTTGGACACGCCTAATGTACAGACATTCACCAAAACTGACTATCAGTACCAAGCAACTTTGATAAATACCTGTGGATTAATAAGAAGTTTAAGTTGTGTTACTCTCTATTTCAATTAGTAAAGCTTTCAAAGACCCATTACTTCATATTTGAGTTTATCCATGTTTAGTGTGTACTATTTTTCTTTTCTGTAGCCTTCTTAGAGTGTGAGACATGCTTTTCATTAATTGTGAACATCAGGTGAGGCATATAAAGTCAAGAATTCAAAATAGTTCAAGTGTGAAGCATTTTTAAAAAAAAACATGATGCAACAGTTCAATTCAATTTGTTAATTGTCGTTTCTTTGTAATTATTTGTGACGCTGACAAGCAATTTCAGAGTGAAAATTGTTTACAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557409 lncRNA downstream 9819 47552 ~ 48064 (-) True G485753
TU556955 lncRNA downstream 37651 19983 ~ 20232 (-) True G485360
TU557401 lncRNA upstream 1546 60185 ~ 118368 (-) True G485745
TU557434 lncRNA upstream 48246 106885 ~ 113896 (-) True G485771
TU557438 lncRNA upstream 82572 141211 ~ 141449 (-) True G485775
TU557467 lncRNA upstream 292717 351356 ~ 351724 (-) True G485796
TU557534 lncRNA upstream 420786 479425 ~ 480779 (-) True G485852
CI01000340_00035016_00043632.mRNA mRNA downstream 13849 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00031137_00033754.mRNA mRNA downstream 24129 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 30053 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00062787_00080635.mRNA mRNA upstream 4141 62780 ~ 80972 (-) False CI01000340_00062787_00080635
CI01000340_00095106_00097863.mRNA mRNA upstream 36407 95046 ~ 97863 (-) True CI01000340_00095106_00097863
CI01000340_00100271_00103531.mRNA mRNA upstream 41409 100048 ~ 103531 (-) True CI01000340_00100271_00103531
CI01000340_00145063_00147754.mRNA mRNA upstream 85887 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 91896 150535 ~ 155343 (-) True CI01000340_00151447_00155343
TU557403 other upstream 20776 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557449 other upstream 266695 325334 ~ 325716 (-) False G485786
TU557450 other upstream 266695 325334 ~ 325663 (-) True G485786
TU557495 other upstream 727912 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1837162 1895801 ~ 1902272 (-) True G487884

Expression Profile