RNA id: TU557401


Basic Information

Item Value
RNA id TU557401
length 1752
lncRNA type read_through
GC content 0.35
exon number 2
gene id G485745
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 60185 ~ 118368 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTTGCTGCAGTTTCCTGTTCTGGTTCCAGGCTCCAGTTCCTGTTCCAGTCCCGATTTCAAGATTTGCTAAGCTAAGTCTAACTCTATAGAGTTGTGAAGTTGCTCTCTCAAGACTCTGAAGCTCTAAAGAGAAAAACAAGGAAGTTCTGCAAGAAGTGAATTTGGGGAGTTTGAAAACTGCAACGGAGACAACGATGACAAGCTTAGTCCCCATCTTCAAAATATCTTCTGCACCAACTTCAAAATCCTCTAATCAAAGATCCTCCAGATCTGCACTGACTTCAGAATCTAAAGATTTTTCTGTCTGTGTGTTCCAGAGAATAAGGATCGTCTGCACAAACATCAGAATCATCAACTTCAAGGCTTCTTCTTCTGGATGTTCCAGGAAAAGGACCTTCTCTATGGTTCAGGAGTTCAACGTTCACATAATTCATGTTCAAGGCTGTGAAACGAATTCCAACTCCTTTACTTTCCACTGCAACACTGCCCAGCTCAATCAGTGAAGACGTCACCCTTGGATTCAGCACGACCAGGCAGACGTAAATATCACTTACTAAACCTCTTTTAGAGACCTTGGCATTGGTGTATATTGTCAGTGTATGATTATCTAATTTTCAGAACAAGGTTTACCTGTTTTCTTCCAGAGAAACTACAGTTTATCTTTCCATAAGATTAACTTGTAAGATTAACAAGTTAATCTTATAGTAACATCCAACTCATTCACTTGCATTTGTTAATCTTTTTGCACTTTATCCATTCAGTAGTTGTTAGTTACTCTTGTCTATCCTTTTGTTAATAAAATCTTTTTATTACACTTGTGTCTTCCTTGTGTTGATAATACAGTAAGAGGCTATACAAGTTAACGATATCTCACAAATCCTTCAGATTGGTCAGATGACGAACTTCCTCCAATTTATATAATTGTAATTCAGTCACCAATCTTCCATGATTGTTCTTAACTGTCAAGGTGAAATTCCTTGGCTGGTGCCCCATAATATAGGAAGGAATCATCTGACACCCTCACACTCACCTTAGGTGACGTGACCGAAAACTCAATATTAATATTAATACTGAATATTAATATTTAAGACCATAAAACACTACAAGATTCAGTGATATCATATTGTGTGTATGTATTTTTATTGTACTTACCCTGTAACTTCATGGAACCAGAGGGTAACAAGCACCACTTTAATTTACAGCATGCAGATGTCAGACTTACCCTGTAATGGAACAAGAGTATATTTCCCTAGTATTAAAAAAAAGTTGCAATAGTCTTAATTTTACTTGCCTTGAAACATGGAAGACCAAACTAAATCAGTGCACTTTTGCTATTAAAAAAAAAAAATTTTTTTTAAAAAAAGTCTTTATTTATTGGTACACTAAAAAGGTAAACAGTGTATGTTCACGCTAAATTGCTCCCAAGCGTAAGATTCTTGCATAATAATAGTAAAATAAGTATCATAATATCATAATAGTAGAATAAGTACCCCTTAGTTCTGAAATACTTACAGTATAAATAATTTATTAATTTTCTTGGTTGTTACCCCTTTATTCCTAGAACTTTACATATTGTTTCCTTATACCTACATGTACATTATAGGTACACTTTAATTACGGAAAGGAACGCTGCAAATTCTTTTTACTTACGCAGTACTTTTCGGGCTGTAATCTAAAGCATTACCCACATTTTTATGTTGTCACGATTGCTGGAAGGAGGAAAGCATTTGAGAGATGGACCTAATTGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557399 lncRNA downstream 142 57883 ~ 60043 (-) False G485744
TU557400 lncRNA downstream 1546 57883 ~ 58639 (-) True G485744
TU557409 lncRNA downstream 12121 47552 ~ 48064 (-) True G485753
TU556955 lncRNA downstream 39953 19983 ~ 20232 (-) True G485360
TU557438 lncRNA upstream 22843 141211 ~ 141449 (-) True G485775
TU557467 lncRNA upstream 232988 351356 ~ 351724 (-) True G485796
TU557534 lncRNA upstream 361057 479425 ~ 480779 (-) True G485852
TU557482 lncRNA upstream 378309 496677 ~ 499007 (-) True G485805
TU557471 lncRNA upstream 456028 574396 ~ 676396 (-) False G485800
CI01000340_00035016_00043632.mRNA mRNA downstream 16151 35016 ~ 44034 (-) True CI01000340_00035016_00043632
CI01000340_00031137_00033754.mRNA mRNA downstream 26431 30780 ~ 33754 (-) True CI01000340_00031137_00033754
CI01000340_00023459_00027830.mRNA mRNA downstream 32355 22938 ~ 27830 (-) True CI01000340_00023459_00027830
CI01000340_00145063_00147754.mRNA mRNA upstream 26158 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00151447_00155343.mRNA mRNA upstream 32167 150535 ~ 155343 (-) True CI01000340_00151447_00155343
CI01000340_00197972_00296049.mRNA mRNA upstream 79604 197972 ~ 296049 (-) True CI01000340_00197972_00296049
CI01000340_00300171_00311362.mRNA mRNA upstream 181527 299895 ~ 312018 (-) True CI01000340_00300171_00311362
CI01000340_00320527_00323526.mRNA mRNA upstream 201775 320143 ~ 324010 (-) True CI01000340_00320527_00323526
TU557449 other upstream 206966 325334 ~ 325716 (-) False G485786
TU557450 other upstream 206966 325334 ~ 325663 (-) True G485786
TU557495 other upstream 668183 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1777433 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3887437 4005805 ~ 4006448 (-) True G488782

Expression Profile