RNA id: TU557467


Basic Information

Item Value
RNA id TU557467
length 341
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G485796
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 351356 ~ 351724 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTAAATTAATGGGTCTTAGAGAGAGGAAATGTCATTGCTGGCTATGGAGGCCTCACTGAGCCATCGGATTTCAACAAAAATATCTTAATTTGTGTTCCGAAGATTATGAGTGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAACGTACTAAGGTTTCTCACCATTCCTGATTTCTAACACGCACTCACAGTGTTTGGCGTGGTGTTGCGGCTGTCAGAATAGAAACAGAAGCTGCTGCTCTCCATATGTTTCTCTGTTATCTCCGGGTGCGTTCATATGTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557438 lncRNA downstream 209907 141211 ~ 141449 (-) True G485775
TU557401 lncRNA downstream 232988 60185 ~ 118368 (-) True G485745
TU557434 lncRNA downstream 237460 106885 ~ 113896 (-) True G485771
TU557399 lncRNA downstream 291313 57883 ~ 60043 (-) False G485744
TU557400 lncRNA downstream 292717 57883 ~ 58639 (-) True G485744
TU557534 lncRNA upstream 127701 479425 ~ 480779 (-) True G485852
TU557482 lncRNA upstream 144953 496677 ~ 499007 (-) True G485805
TU557471 lncRNA upstream 222672 574396 ~ 676396 (-) False G485800
TU557472 lncRNA upstream 222672 574396 ~ 676396 (-) True G485800
TU557473 lncRNA upstream 332239 736957 ~ 738306 (-) True G485801
CI01000340_00320527_00323526.mRNA mRNA downstream 27346 320143 ~ 324010 (-) True CI01000340_00320527_00323526
CI01000340_00300171_00311362.mRNA mRNA downstream 39338 299895 ~ 312018 (-) True CI01000340_00300171_00311362
CI01000340_00197972_00296049.mRNA mRNA downstream 55307 197972 ~ 296049 (-) True CI01000340_00197972_00296049
CI01000340_00151447_00155343.mRNA mRNA downstream 196013 150535 ~ 155343 (-) True CI01000340_00151447_00155343
CI01000340_00145063_00147754.mRNA mRNA downstream 202258 144526 ~ 149098 (-) True CI01000340_00145063_00147754
CI01000340_00399009_00473643.mRNA mRNA upstream 47285 399009 ~ 473643 (-) True CI01000340_00399009_00473643
CI01000340_00641314_00671233.mRNA mRNA upstream 289569 641293 ~ 671233 (-) True CI01000340_00641314_00671233
CI01000340_00683967_00684845.mRNA mRNA upstream 331070 682794 ~ 684845 (-) False CI01000340_00683967_00684845
CI01000340_00739436_00741531.mRNA mRNA upstream 386681 738405 ~ 741637 (-) True CI01000340_00739436_00741531
CI01000340_00750353_00755174.mRNA mRNA upstream 398415 750139 ~ 755174 (-) True CI01000340_00750353_00755174
TU557449 other downstream 25640 325334 ~ 325716 (-) False G485786
TU557450 other downstream 25693 325334 ~ 325663 (-) True G485786
TU557403 other downstream 269261 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU557495 other upstream 434827 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU559770 other upstream 1544077 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3654081 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 4155472 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 4248496 4658632 ~ 4659061 (-) True G488887

Expression Profile