RNA id: TU557249


Basic Information

Item Value
RNA id TU557249
length 224
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G485616
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 681969 ~ 682218 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTACAGTGGTTCAAACTTAATGTTATGAAGCGACGAGAAAAAAAATCTGTAACGCTTCGAAGCAGTGTTTTGAAATCGTCCATCACTAGATATTGTTGAATAAAGTCGTTAATTTGTTTTTTTTTGCCGCACAAAATGTATTCTCGTTGCTTCATTACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTATAGCTTTCTGGGCATC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557233 lncRNA upstream 181 680323 ~ 681788 (+) True G485600
TU557247 lncRNA upstream 2590 679167 ~ 679379 (+) True G485614
TU557196 lncRNA upstream 109790 571707 ~ 572179 (+) False G485564
TU557194 lncRNA upstream 109790 571818 ~ 572179 (+) True G485564
TU557195 lncRNA upstream 109838 571707 ~ 572131 (+) False G485564
TU557252 lncRNA downstream 485 682703 ~ 682992 (+) True G485618
TU557291 lncRNA downstream 63053 745271 ~ 745493 (+) True G485654
TU557297 lncRNA downstream 76128 758346 ~ 758572 (+) True G485659
TU557260 lncRNA downstream 87680 769898 ~ 773660 (+) True G485626
TU557309 lncRNA downstream 114981 797199 ~ 797540 (+) True G485671
CI01000340_00672283_00673853.mRNA mRNA upstream 7477 672283 ~ 674492 (+) True CI01000340_00672283_00673853
CI01000340_00630670_00634136.mRNA mRNA upstream 47738 630547 ~ 634231 (+) True CI01000340_00630670_00634136
CI01000340_00575085_00576868.mRNA mRNA upstream 104513 574460 ~ 577456 (+) True CI01000340_00575085_00576868
CI01000340_00559281_00560682.mRNA mRNA upstream 121287 558024 ~ 560682 (+) True CI01000340_00559281_00560682
CI01000340_00529527_00543895.mRNA mRNA upstream 137461 529527 ~ 544508 (+) True CI01000340_00529527_00543895
CI01000340_00710056_00726924.mRNA mRNA downstream 27612 709830 ~ 727495 (+) True CI01000340_00710056_00726924
CI01000340_00883803_00902915.mRNA mRNA downstream 201183 883401 ~ 903402 (+) True CI01000340_00883803_00902915
CI01000340_00927319_01001912.mRNA mRNA downstream 245101 927319 ~ 1001912 (+) True CI01000340_00927319_01001912
CI01000340_01065200_01074925.mRNA mRNA downstream 382431 1064649 ~ 1075153 (+) True CI01000340_01065200_01074925
CI01000340_01146151_01149216.mRNA mRNA downstream 462944 1145162 ~ 1149477 (+) True CI01000340_01146151_01149216
TU557142 other upstream 368724 311792 ~ 312038 (+) True G485516
TU557027 other upstream 514335 163286 ~ 167634 (+) True G485427
TU556971 other upstream 568200 106885 ~ 113769 (+) True G485373
TU558577 other downstream 2247873 2930091 ~ 2931800 (+) True G486806
TU558935 other downstream 3291697 3973915 ~ 3982545 (+) True G487133
TU559057 other downstream 3717201 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU559265 other downstream 3982091 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU561697 other downstream 6012003 6694221 ~ 6700788 (+) False G489634

Expression Profile