RNA id: TU557309


Basic Information

Item Value
RNA id TU557309
length 342
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G485671
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 797199 ~ 797540 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGTCCCTTTGCATACCACTGTAATAGTATGAAAAAGGACAACATATATTGCACATTTGTGGTCTGTTCTCCCGATATAATTTACGATATATCCCATTAATAGTTCACTGGAATGCACGAAGAATCTCTCGTTTTTCTCCTCAAAGCCTCACGTCTCTTTCCAGGTTTGTTTTCACAGGTAAATACAATTTATTATTTGTAAAAATGATGGAAATCACTTTGAAATAGTATCACGCAATGCTTAAGTTCATGAACATTTTTTTATTAAGGCAACATATATTATATAATACAGATATATATATCACTATAGTTGTATTTAACCCGTCCGTTTTGGCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557260 lncRNA upstream 23539 769898 ~ 773660 (+) True G485626
TU557297 lncRNA upstream 38627 758346 ~ 758572 (+) True G485659
TU557291 lncRNA upstream 51706 745271 ~ 745493 (+) True G485654
TU557252 lncRNA upstream 114207 682703 ~ 682992 (+) True G485618
TU557249 lncRNA upstream 114981 681969 ~ 682218 (+) True G485616
TU557334 lncRNA downstream 22629 820169 ~ 820897 (+) True G485689
TU557339 lncRNA downstream 28086 825626 ~ 828842 (+) True G485693
TU557353 lncRNA downstream 53448 850988 ~ 853533 (+) True G485706
TU557364 lncRNA downstream 220794 1018334 ~ 1018547 (+) True G485717
TU557365 lncRNA downstream 221080 1018620 ~ 1018830 (+) True G485718
CI01000340_00710056_00726924.mRNA mRNA upstream 69704 709830 ~ 727495 (+) True CI01000340_00710056_00726924
CI01000340_00672283_00673853.mRNA mRNA upstream 122707 672283 ~ 674492 (+) True CI01000340_00672283_00673853
CI01000340_00630670_00634136.mRNA mRNA upstream 162968 630547 ~ 634231 (+) True CI01000340_00630670_00634136
CI01000340_00575085_00576868.mRNA mRNA upstream 219743 574460 ~ 577456 (+) True CI01000340_00575085_00576868
CI01000340_00559281_00560682.mRNA mRNA upstream 236517 558024 ~ 560682 (+) True CI01000340_00559281_00560682
CI01000340_00883803_00902915.mRNA mRNA downstream 85861 883401 ~ 903402 (+) True CI01000340_00883803_00902915
CI01000340_00927319_01001912.mRNA mRNA downstream 129779 927319 ~ 1001912 (+) True CI01000340_00927319_01001912
CI01000340_01065200_01074925.mRNA mRNA downstream 267109 1064649 ~ 1075153 (+) True CI01000340_01065200_01074925
CI01000340_01146151_01149216.mRNA mRNA downstream 347622 1145162 ~ 1149477 (+) True CI01000340_01146151_01149216
CI01000340_01322847_01325739.mRNA mRNA downstream 525307 1322847 ~ 1327211 (+) True CI01000340_01322847_01325739
TU557142 other upstream 483954 311792 ~ 312038 (+) True G485516
TU557027 other upstream 629565 163286 ~ 167634 (+) True G485427
TU556971 other upstream 683430 106885 ~ 113769 (+) True G485373
TU558577 other downstream 2132551 2930091 ~ 2931800 (+) True G486806
TU558935 other downstream 3176375 3973915 ~ 3982545 (+) True G487133
TU559057 other downstream 3601879 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU559265 other downstream 3866769 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU561697 other downstream 5896681 6694221 ~ 6700788 (+) False G489634

Expression Profile