RNA id: TCONS_00020478


Basic Information

Item Value
RNA id TCONS_00020478
length 1834
RNA type mRNA
GC content 0.44
exon number 11
gene id XLOC_010423
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6395311 ~ 6424818 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTTGTCTCTTCATCATGCTGCGGTTCTGACATAACGCGACATTTTCACCCGTAATGTTTACAGCCACGACGTCGCTATTTGTGAGGTGATACAGTGATTTATACAATGCAGAATGGACAAGAAGAAAAACATAGACATTGCTTTTAAAACCACTGGATGCACTTGGTTAAGTCCAGTCAGCGATCAGGTTGGAGTTCCTTTGGATCAGGTGAATTTCATTGCCTGTCAGCTGTTTGGATTAGCAGCTGCATTCTGGTTTCGCCTCTTTCTCAGTCCCCAACGTGCCACTCCTGAGGTCCGACATGCGGTCGCTGCCATCCTTGGAGCTTCGTCTGTCATGTTTTGCTTTGGCTGGTATGCTGTACATATCTTCATTCTGGTTTTGGCTTGTTATGGGATTATGATTAAAGCCAGCGTCCGCAATGTTCACAGaTATACTATGGTTGCATCAATCGGATACCTAACAGCTTGCCAAGTGAGCAGAGTGTTCATATTCGACTATGGCATCCTGTCCACAGATTTCTCTGGCCCTTTGATGATGATCACACAGAAAATCACTAGTCTCGCCTTCCAGGTCTATGATGGTATGGGTCGAAAGCAAGAGGAACTGAAAGATGATCAGAGGCAGCTGGCTGTACAcTCTAAGCCATCGCTGTTGGAGTACCTAAGCTACAATATAAATTTCCTGAGTGTCTTGGTGGGTCCCTGTAGTAATTATAAAGACTACGAAGAGTTTATAAAGGGCCAGCATGTCCAGCACAGGCTGAAAAGAGTGAAAGACGGCAGCTTGCAACAGAACGGCTGGGATAAAGTGCCTGAGCCATCGCCTGTGAGGACTGTGATTACGAAGGTTCTTGTGTGCGTTTGCTGTCTGCTCTGGTTCTTTATCATCACCCGGGCATTCCCCATAAAGTACAATGTGGACCCACAGTTCATCACGGAGGCCTCTTTCATTAGCAGACTGGCTTATGCCTTTGTATCCATCCAGGCAGCCAGACCCAAGTTCTACTTCGCATGGACGCTTGCGGATGCAGTACATAATGCAGCGGGTTATGGAGTCAGCGGTGTGAATGAGAGAGGAGAAGTGTCCTGGGACCTTGTCTCCAACGTTCGCATCTGGGAAATTGAGACAGCGACgagttttaaatcatttattgacAACTGGAATATACAGACGGGTCTTTGGCTGAAAAGGTATagtgtgtgcgtttgtgtgtttatgcgtgtgtgtgtgtgtgtgcgcgcggggTCGCCTTTGTGCAAACTGAGAGAGCAACGACATTGACGGACAAAGGCTACTTTgtgtgaacacaaaaaaaaagctgGGCCTCCGCTTGCTTACAGGcagttcacaaacacacacagactaaaCCTCACTAGGGATGCACTCCATTGAAAAGACACACACATAAGCAATGATTTCATGAGAACAAATAAGGGAACGCACAGTTTGAGATTAAGTCCTAACAAGGCAGCTATTTGCAAGATTTCCTAAGGAAAATGAACGCTGCCCATTTTAAGCGTCTTTTAACTAGTTTAACACTGTATGCTAGAGAAGGAGGTATCCTTAATTGTACGtcgtttgctaatttattttggatgtagTTGTGGTACTGATGCTGAGAGTTGAGTGAGGTTTTTATAGAACTGAATATTAATGTGCAGACAGTAACTTAGTTTTGTGGTGTAAAGACGTCTGTTGTGAGTATGCAATGCGTAACTGCtgtgaaaaatgaatgaaagtagtACTGCTGCAATATTAACTGACGAAGAATGGAATTAGAATTATATGTGTTGTGGATGGTGATacttaaataaatgttacagTTTTT

Function

GO:

id name namespace
GO:0030258 lipid modification biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041114-98 Predicted to enable acyltransferase activity. Predicted to be involved in lipid modification. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in central nervous system; cranial ganglion; neural tube; and neurons. Orthologous to human MBOAT1 (membrane bound O-acyltransferase domain containing 1).

Ensembl:

ensembl_id ENSDART00000141860

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021781 lncRNA downstream 4032 6387627 ~ 6391279 (-) True XLOC_010422
TCONS_00022094 lncRNA downstream 8669 6383530 ~ 6386642 (-) True XLOC_010421
TCONS_00022093 lncRNA downstream 43621 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00022092 lncRNA downstream 43621 6291173 ~ 6351690 (-) True XLOC_010419
TCONS_00022091 lncRNA downstream 43803 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022095 lncRNA upstream 51198 6476016 ~ 6476727 (-) False XLOC_010424
TCONS_00022097 lncRNA upstream 51198 6476016 ~ 6484227 (-) False XLOC_010424
TCONS_00022096 lncRNA upstream 51198 6476016 ~ 6484227 (-) True XLOC_010424
TCONS_00022098 lncRNA upstream 87528 6512346 ~ 6556501 (-) False XLOC_010425
TCONS_00020480 lncRNA upstream 87528 6512346 ~ 6556501 (-) False XLOC_010425
TCONS_00020477 mRNA downstream 4036 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 17639 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 189521 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020475 mRNA downstream 196768 6183485 ~ 6198543 (-) True XLOC_010417
TCONS_00020470 mRNA downstream 521445 5786770 ~ 5873866 (-) False XLOC_010415
TCONS_00020489 mRNA upstream 378652 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 378727 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 395630 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 395630 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 512368 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 524622 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 537330 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1287894 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1333682 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1675926 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 403734 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 795174 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1269063 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1269976 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1862953 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

//