RNA id: TU557643


Basic Information

Item Value
RNA id TU557643
length 358
lncRNA type intronic
GC content 0.31
exon number 2
gene id G485954
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 931601 ~ 932122 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGTTATACACCTTTTGTCAGGATTCTCTAATTAATAGTTCAAAAGTTCAACTTTTAGTTTACTTATTTATTTATTTTTTGTGATCATTTTTTATTGGTTTTACATAAAGAAGGTCACTTACAAATTTTCCAAGAGATTCTTCACATTTCGAAGCTTTACAAATCTTTTGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAATAAAGTCGTTATTTTGTTTTTTTGGCGCACAAATGTATTCTCGTCGCTTCGTAACATTAAGGTTAAACCACTGTAGTCACATGAACTGTTTTAAATACATCTTTAGTAGCTTTCTGGGCATTGAAAGTGTTAATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557473 lncRNA downstream 193295 736957 ~ 738306 (-) True G485801
TU557570 lncRNA downstream 242577 688022 ~ 689024 (-) True G485888
TU557471 lncRNA downstream 255205 574396 ~ 676396 (-) False G485800
TU557472 lncRNA downstream 255205 574396 ~ 676396 (-) True G485800
TU557482 lncRNA downstream 432594 496677 ~ 499007 (-) True G485805
TU557652 lncRNA upstream 10285 942407 ~ 943669 (-) True G485962
TU557676 lncRNA upstream 46066 978188 ~ 978858 (-) True G485986
TU557635 lncRNA upstream 53851 985973 ~ 1011769 (-) False G485947
TU557640 lncRNA upstream 55104 987226 ~ 988409 (-) True G485951
TU557634 lncRNA upstream 75698 1007820 ~ 1011769 (-) True G485947
CI01000340_00922398_00926008.mRNA mRNA downstream 4675 922073 ~ 926926 (-) True CI01000340_00922398_00926008
CI01000340_00878949_00880017.mRNA mRNA downstream 49370 877772 ~ 882231 (-) True CI01000340_00878949_00880017
CI01000340_00840521_00859645.mRNA mRNA downstream 71956 840074 ~ 859645 (-) True CI01000340_00840521_00859645
CI01000340_00798980_00828835.mRNA mRNA downstream 102766 798980 ~ 828835 (-) True CI01000340_00798980_00828835
CI01000340_00787534_00791061.mRNA mRNA downstream 140262 787172 ~ 791339 (-) False CI01000340_00787534_00791061
CI01000340_01119764_01121682.mRNA mRNA upstream 187567 1119689 ~ 1123636 (-) True CI01000340_01119764_01121682
CI01000340_01339075_01340999.mRNA mRNA upstream 406218 1338340 ~ 1341487 (-) True CI01000340_01339075_01340999
CI01000340_01356603_01359427.mRNA mRNA upstream 424338 1356460 ~ 1359427 (-) True CI01000340_01356603_01359427
CI01000340_01375418_01382944.mRNA mRNA upstream 442920 1375042 ~ 1382944 (-) True CI01000340_01375418_01382944
CI01000340_01385672_01396802.mRNA mRNA upstream 452627 1384749 ~ 1398796 (-) True CI01000340_01385672_01396802
TU557495 other downstream 140192 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 605885 325334 ~ 325716 (-) False G485786
TU557450 other downstream 605938 325334 ~ 325663 (-) True G485786
TU557403 other downstream 849506 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU559770 other upstream 963679 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 3073683 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 3575074 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 3668098 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 4388631 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778

Expression Profile