RNA id: TU557978


Basic Information

Item Value
RNA id TU557978
length 547
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G486267
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1250482 ~ 1251964 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCATCTTCATGTCCAGAGCCCAACAACCCTCTCTCCAATGTAGCAGTCGACATCTGATCCTCTGCTGGAGCCCTGACTAAGATGCTAGGTCCCCCATGAGAAGGACCAGCAATCCACCCAGAAGCTACCAGCCATGTGGGAGAGTGAACGTGGTCGTCTAACTGAACGACACACGGCGCTGAGCGCCGACGTGGCCATGTTTTTACCAAACATAAACCACCCACGAACACAGTCACAACATGTTTGCGATGCATTAGAGGAGTGGGGGGCCCACGGAGATTGGCTCGGCAGGTATTGCCCCACTGTGATCCTCTGGTCACCCTGGCTTATTCACCAAAAGTAGTACTTTTCTGATTCAGAAAGAGAAACTAGATCGGGGAATAGGTGAGGGGACTCCACCTCATTTGAGGCACTCGAGTCTCGACCACGCATCTAGAGCGCCGAACAACGCGCTGGGTTGCCATGGCAACGCGCGCTGTCAGCCGGCAGCTCGACGGCACACGGCGTGCTGAGCGCTCAAGCCCTTACGAGAAAGGCAAGACGAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557845 lncRNA downstream 27027 1213049 ~ 1223455 (-) True G486153
TU557801 lncRNA downstream 100165 1150092 ~ 1150317 (-) True G486110
TU557725 lncRNA downstream 158942 1091220 ~ 1091540 (-) True G486035
TU557721 lncRNA downstream 162606 1087619 ~ 1087876 (-) True G486031
TU557686 lncRNA downstream 237654 1012476 ~ 1012828 (-) True G485996
TU558004 lncRNA upstream 34671 1286635 ~ 1286931 (-) True G486289
TU557991 lncRNA upstream 180480 1432444 ~ 1432671 (-) True G486276
TU558067 lncRNA upstream 242475 1494439 ~ 1494642 (-) True G486348
TU558128 lncRNA upstream 305309 1557273 ~ 1557510 (-) True G486406
TU559757 lncRNA upstream 429396 1681360 ~ 1682396 (-) True G487872
CI01000340_01119764_01121682.mRNA mRNA downstream 126846 1119689 ~ 1123636 (-) True CI01000340_01119764_01121682
CI01000340_00922398_00926008.mRNA mRNA downstream 323556 922073 ~ 926926 (-) True CI01000340_00922398_00926008
CI01000340_00878949_00880017.mRNA mRNA downstream 368251 877772 ~ 882231 (-) True CI01000340_00878949_00880017
CI01000340_00840521_00859645.mRNA mRNA downstream 390837 840074 ~ 859645 (-) True CI01000340_00840521_00859645
CI01000340_00798980_00828835.mRNA mRNA downstream 421647 798980 ~ 828835 (-) True CI01000340_00798980_00828835
CI01000340_01339075_01340999.mRNA mRNA upstream 86376 1338340 ~ 1341487 (-) True CI01000340_01339075_01340999
CI01000340_01356603_01359427.mRNA mRNA upstream 104496 1356460 ~ 1359427 (-) True CI01000340_01356603_01359427
CI01000340_01375418_01382944.mRNA mRNA upstream 123078 1375042 ~ 1382944 (-) True CI01000340_01375418_01382944
CI01000340_01385672_01396802.mRNA mRNA upstream 132785 1384749 ~ 1398796 (-) True CI01000340_01385672_01396802
CI01000340_01400601_01408156.mRNA mRNA upstream 147492 1399456 ~ 1408156 (-) True CI01000340_01400601_01408156
TU557495 other downstream 459073 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 924766 325334 ~ 325716 (-) False G485786
TU557450 other downstream 924819 325334 ~ 325663 (-) True G485786
TU557403 other downstream 1168387 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU559770 other upstream 643837 1895801 ~ 1902272 (-) True G487884
TU560772 other upstream 2753841 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 3255232 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 3348256 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 4068789 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778

Expression Profile