RNA id: TCONS_00022097


Basic Information

Item Value
RNA id TCONS_00022097
length 876
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id XLOC_010424
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6476016 ~ 6484227 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTGCTGTGGCTGAGCGCTTCTTGAAATACAGACCAGTTGTTTGTTAGAGCTTTAAAGATGTAATTTAACTAAACTAGCTCCTGTGTGGTGAAGCTATTGGAGTCAGACTTCTACTTTCAATGATCTTCTTGTTAACATCTAATAATTCACCCAAAGAGAActgaccacttacctccatatggaccgCTATCACGCTGTTACCAGAATGTCGAGTATGTATGTGCcatgtatgttggtggacttgagatgtaGAGAAGAGTTGACCACACCGATGAGGTTTGAATCTGGCAAAGAACAGttgcagaaagcagTTAACTCCGATCCAATCAGATCCATGCTGCATGTAGACCATATGGCGGTCCTGCATCTAGGAAGGACCTTTCACAGTCATCTAAACCTTGACAACACAAGCCCTCCAGACAGAGTATCAATAAAGACGCCGGAGCCCTCAGCACAGATCCCTCTGACAAGCTTGAATATGTCATGTGAGGACCAGCTGGGACTAAACACAATCATGAACACCGTTTGTTCATGATTGATTCATTTTGCAACATGGACAATGTTACTGAATCAACACTGTATTGATTGGAATTGAAAAATGACATGGCTGTGTTCAGTAGAGCTGCTTACCGATGACATGAGCATTTCATAATGAATGACCTTTGCACCGTTATTGAATACCTCTTTCTATCATAATGGTTATGTTATGGAGCCAGTGTCAAGTGAACTGGAGCCTGTCATGAGCTGGCCGTGGAATTTCCCATACTTAACCTCACTTCAACcggtataaaaacaaatattgtgcatgttcttCAGGCAATATGGTTATActtatttcaaattttttttatttaataaaattttgttattattca

Function

GO:

id name namespace
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0001510 RNA methylation biological_process
GO:0043414 macromolecule methylation biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function
GO:0016741 transferase activity, transferring one-carbon groups molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021781 lncRNA downstream 84737 6387627 ~ 6391279 (-) True XLOC_010422
TCONS_00022094 lncRNA downstream 89374 6383530 ~ 6386642 (-) True XLOC_010421
TCONS_00022093 lncRNA downstream 124326 6291173 ~ 6351690 (-) False XLOC_010419
TCONS_00022092 lncRNA downstream 124326 6291173 ~ 6351690 (-) True XLOC_010419
TCONS_00022090 lncRNA downstream 124508 6291173 ~ 6351508 (-) False XLOC_010419
TCONS_00022098 lncRNA upstream 28119 6512346 ~ 6556501 (-) False XLOC_010425
TCONS_00020480 lncRNA upstream 28119 6512346 ~ 6556501 (-) False XLOC_010425
TCONS_00021782 lncRNA upstream 28254 6512481 ~ 6549311 (-) False XLOC_010425
TCONS_00022099 lncRNA upstream 49595 6533822 ~ 6556117 (-) False XLOC_010425
TCONS_00020483 lncRNA upstream 49595 6533822 ~ 6556501 (-) False XLOC_010425
TCONS_00020478 mRNA downstream 51198 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA downstream 51200 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020477 mRNA downstream 84741 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 98344 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 270226 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020489 mRNA upstream 319243 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 319318 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 336221 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 336221 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 452959 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 605327 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 618035 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1368599 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1414387 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1756631 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 344325 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 735765 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1209654 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1210567 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1803544 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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