RNA id: TU557947


Basic Information

Item Value
RNA id TU557947
length 216
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G486236
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1421895 ~ 1422110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTCACCTTTAGAGAAAAATACGTCAAAGACGACCACACACTCTTCAGCAGCTGGAAACCTATTTCAGGCAAAAATGGGACCAAATTTCAACACCAAAACTCCAGAAACTCATAACCTCGATGCCCAGATGTCTTCACACTGTTTTAAAAAGAAGAGGAGATGCTACACCATGGTAAACATGACCCCGTCCCAACTATTTTGAGACCTGTAGCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU557946 lncRNA upstream 1097 1420228 ~ 1420798 (+) True G486235
TU557945 lncRNA upstream 2820 1418826 ~ 1419075 (+) True G486234
TU557936 lncRNA upstream 24875 1396702 ~ 1397020 (+) True G486225
TU557935 lncRNA upstream 25743 1395915 ~ 1396152 (+) True G486224
TU557906 lncRNA upstream 39785 1374915 ~ 1382110 (+) True G486203
TU558066 lncRNA downstream 71204 1493314 ~ 1493644 (+) True G486347
TU558105 lncRNA downstream 105397 1527507 ~ 1527833 (+) True G486383
TU558125 lncRNA downstream 135344 1557454 ~ 1557753 (+) True G486403
TU558149 lncRNA downstream 170985 1593095 ~ 1593322 (+) True G486427
TU558183 lncRNA downstream 234723 1656833 ~ 1661924 (+) True G486461
CI01000340_01343319_01351087.mRNA mRNA upstream 70272 1342073 ~ 1351623 (+) True CI01000340_01343319_01351087
CI01000340_01322847_01325739.mRNA mRNA upstream 94684 1322847 ~ 1327211 (+) True CI01000340_01322847_01325739
CI01000340_01146151_01149216.mRNA mRNA upstream 272418 1145162 ~ 1149477 (+) True CI01000340_01146151_01149216
CI01000340_01065200_01074925.mRNA mRNA upstream 346742 1064649 ~ 1075153 (+) True CI01000340_01065200_01074925
CI01000340_00927319_01001912.mRNA mRNA upstream 419983 927319 ~ 1001912 (+) True CI01000340_00927319_01001912
CI01000340_01426152_01431129.mRNA mRNA downstream 4042 1426152 ~ 1431147 (+) True CI01000340_01426152_01431129
CI01000340_01627145_01646966.mRNA mRNA downstream 204424 1626534 ~ 1647125 (+) True CI01000340_01627145_01646966
CI01000340_01691376_01694051.mRNA mRNA downstream 268989 1691099 ~ 1694848 (+) True CI01000340_01691376_01694051
CI01000340_01708371_01768517.mRNA mRNA downstream 286060 1708170 ~ 1769020 (+) True CI01000340_01708371_01768517
CI01000340_01807038_01807351.mRNA mRNA downstream 384774 1806884 ~ 1807962 (+) False CI01000340_01807038_01807351
TU557142 other upstream 1108650 311792 ~ 312038 (+) True G485516
TU557027 other upstream 1254261 163286 ~ 167634 (+) True G485427
TU556971 other upstream 1308126 106885 ~ 113769 (+) True G485373
TU558577 other downstream 1507981 2930091 ~ 2931800 (+) True G486806
TU558935 other downstream 2551805 3973915 ~ 3982545 (+) True G487133
TU559057 other downstream 2977309 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU559265 other downstream 3242199 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU561697 other downstream 5272111 6694221 ~ 6700788 (+) False G489634

Expression Profile