RNA id: TU559807


Basic Information

Item Value
RNA id TU559807
length 395
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G487918
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1924278 ~ 1925429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCATTATCTCTTTCAGCTTTCTCTCTCTGTTTTCTCTCATTTCTTTCTCAGGGTCATTCTCTTCTTGTAAACTGATATTGTTAAAAAGAACCTCCTCTTTGTTCTGCAACAACAGCAGTTTAGCCTCTATGGATGAGCTCTTGCTTGCCATGTCTTTTGACTCCTGGAGAAACAGTTGTCTCAGCTCTCCAATTTCTTGTTGAAATTTTCTTCTTTCCTCTTCTTTCCATCTCTCCAGTGCTTCTTTCTCTGACTGTTCTCTCCTTTGCTGTTCTTCATGTTCCTGCTGCCGTCTCAAACTGTCGGTTTCTCTCTCTGCCTGAAGCTGCATCTGTGTCAATCTCAGTCTCTCCTTCAGTTCTTCAATCCCATCTTCCATCTGTTCGACCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559793 lncRNA downstream 93255 1830802 ~ 1831023 (-) True G487905
TU559766 lncRNA downstream 177779 1746237 ~ 1746499 (-) True G487881
TU559763 lncRNA downstream 191998 1732043 ~ 1732280 (-) True G487878
TU559757 lncRNA downstream 241882 1681360 ~ 1682396 (-) True G487872
TU558128 lncRNA downstream 366768 1557273 ~ 1557510 (-) True G486406
TU559818 lncRNA upstream 15898 1941327 ~ 1941535 (-) True G487929
TU559833 lncRNA upstream 48933 1974362 ~ 1974874 (-) True G487942
TU559871 lncRNA upstream 65145 1990574 ~ 1992638 (-) True G487971
TU560000 lncRNA upstream 240563 2165992 ~ 2166240 (-) True G488096
TU560005 lncRNA upstream 268897 2194326 ~ 2194550 (-) True G488101
CI01000340_01916883_01917263.mRNA mRNA downstream 6926 1915653 ~ 1917352 (-) True CI01000340_01916883_01917263
CI01000340_01894781_01909824.mRNA mRNA downstream 12919 1894674 ~ 1911359 (-) True CI01000340_01894781_01909824
CI01000340_01839512_01846883.mRNA mRNA downstream 77385 1838277 ~ 1846893 (-) True CI01000340_01839512_01846883
CI01000340_01785945_01793672.mRNA mRNA downstream 130324 1785827 ~ 1793954 (-) True CI01000340_01785945_01793672
CI01000340_01620065_01624298.mRNA mRNA downstream 299552 1619261 ~ 1624726 (-) True CI01000340_01620065_01624298
CI01000340_01952181_01975472.mRNA mRNA upstream 26086 1951515 ~ 1976286 (-) True CI01000340_01952181_01975472
CI01000340_02008099_02012700.mRNA mRNA upstream 82593 2008022 ~ 2012700 (-) True CI01000340_02008099_02012700
CI01000340_02172629_02189732.mRNA mRNA upstream 246254 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02293072_02301920.mRNA mRNA upstream 367585 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02329631_02332000.mRNA mRNA upstream 404177 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
TU559770 other downstream 22006 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1132869 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 1598562 325334 ~ 325716 (-) False G485786
TU557450 other downstream 1598615 325334 ~ 325663 (-) True G485786
TU557403 other downstream 1842183 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 2080376 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2581767 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2674791 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 3395324 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 4257861 6183290 ~ 6220642 (-) True G489516

Expression Profile