RNA id: TU559833


Basic Information

Item Value
RNA id TU559833
length 513
lncRNA type intronic
GC content 0.43
exon number 1
gene id G487942
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1974362 ~ 1974874 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTTAGGCCTGGGACACACTAGAGGATTTACAAATCTTAACTGTTTTTAAAACAGTAGGAGACTACAGACATAATGACAGTTTCAACTGATTTTTAGCATTATAATCCTCTGAACGCACACACTAGATGATTCGACCAGACTGCGAGACCACACACCTGTTGACTGTAGGAACGATTTCACAGTGAGACGAGATCTCATGGAGACTCGCGAGATCAAACGTGACTTGAGAAGAAAAACAAACAGGACAATCGACGTTGTCAGCTGGCTTTCCTGGAGCAAAGTAGAAAAGTAAGTAGAAAAAAATGAATATGAGTGATCTTCTTTCTCAATACATTTTCGTGGCATGTTTGTGGCTGCCAAGTTTCAGCTAAAGAAGCACGCAACATCCGTTAGGTGACACTTGCGCACTCTCATTGGCTATCGCAGGCATCACGTCAGAGACAGCCCGATTATGGGCCAGATTTACTAAACGGGGCAAATTAGTGTTAGAGCACAATTCCACAAATACGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559818 lncRNA downstream 32827 1941327 ~ 1941535 (-) True G487929
TU559807 lncRNA downstream 48933 1924278 ~ 1925429 (-) True G487918
TU559793 lncRNA downstream 143339 1830802 ~ 1831023 (-) True G487905
TU559766 lncRNA downstream 227863 1746237 ~ 1746499 (-) True G487881
TU559763 lncRNA downstream 242082 1732043 ~ 1732280 (-) True G487878
TU559871 lncRNA upstream 15700 1990574 ~ 1992638 (-) True G487971
TU560000 lncRNA upstream 191118 2165992 ~ 2166240 (-) True G488096
TU560005 lncRNA upstream 219452 2194326 ~ 2194550 (-) True G488101
TU560006 lncRNA upstream 219826 2194700 ~ 2194971 (-) True G488102
TU560007 lncRNA upstream 220236 2195110 ~ 2195384 (-) True G488103
CI01000340_01916883_01917263.mRNA mRNA downstream 57010 1915653 ~ 1917352 (-) True CI01000340_01916883_01917263
CI01000340_01894781_01909824.mRNA mRNA downstream 63003 1894674 ~ 1911359 (-) True CI01000340_01894781_01909824
CI01000340_01839512_01846883.mRNA mRNA downstream 127469 1838277 ~ 1846893 (-) True CI01000340_01839512_01846883
CI01000340_01785945_01793672.mRNA mRNA downstream 180408 1785827 ~ 1793954 (-) True CI01000340_01785945_01793672
CI01000340_01620065_01624298.mRNA mRNA downstream 349636 1619261 ~ 1624726 (-) True CI01000340_01620065_01624298
CI01000340_02008099_02012700.mRNA mRNA upstream 33148 2008022 ~ 2012700 (-) True CI01000340_02008099_02012700
CI01000340_02172629_02189732.mRNA mRNA upstream 196809 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02293072_02301920.mRNA mRNA upstream 318140 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02329631_02332000.mRNA mRNA upstream 354732 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02333476_02337529.mRNA mRNA upstream 358228 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
TU559770 other downstream 72090 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1182953 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 1648646 325334 ~ 325716 (-) False G485786
TU557450 other downstream 1648699 325334 ~ 325663 (-) True G485786
TU557403 other downstream 1892267 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 2030931 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2532322 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2625346 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 3345879 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 4208416 6183290 ~ 6220642 (-) True G489516

Expression Profile