RNA id: TU559871


Basic Information

Item Value
RNA id TU559871
length 632
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G487971
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 1990574 ~ 1992638 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAGCTTATAGAATAATGGACAGTCCAATGGGTCAGGGGTTGGCTGGTTAGCCTGGTCTAGTTAACTACTGCTGGTAGATGCTGTAACTGCAAAATAATGAAGGCAAAAAGTCTTTGTCATACATATATTATAAAATGCAAAAATTAACTCCTTAGTACAGTCATCCGTCATTGTCGCAAAATACTTTTAAAAACGCTTACAGGGTAATAAAGGAACATATCATGAAGCAGATGAGTCTTGTATCACCCTAAATGCTTCTATTTTGCAATAAAGATCATCTGACTGTATTATCCCCCTGTTACATCCACGCCTTCCCGGACTCCAGTTCCCAGAATCCTCCTGTTTTCCTCACCTGTCTTCACTTCCCTCATCAGTCTTCCCGCCATTTTACCCGGATTCCCTGCACCTGTTGTCCTCGTCAGCACTCCCTTTAAGTTGGACTCACTCCCTGCACTCCTGGTCCGTTATATTGTTTGCTACATGTGTGTAAAGCTGTCGTTCTGACCTTCTATATGATTAAAGCCCTTATTCTGTGGATTTCCGTATTTCGCCTCCTCTATACAGCATACACCGTAACACCCCCTTACTACACTATCATTAAAAAGTTTGAGGTGTGTAAGATTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559833 lncRNA downstream 15700 1974362 ~ 1974874 (-) True G487942
TU559818 lncRNA downstream 49039 1941327 ~ 1941535 (-) True G487929
TU559807 lncRNA downstream 65145 1924278 ~ 1925429 (-) True G487918
TU559793 lncRNA downstream 159551 1830802 ~ 1831023 (-) True G487905
TU559766 lncRNA downstream 244075 1746237 ~ 1746499 (-) True G487881
TU560000 lncRNA upstream 173354 2165992 ~ 2166240 (-) True G488096
TU560005 lncRNA upstream 201688 2194326 ~ 2194550 (-) True G488101
TU560006 lncRNA upstream 202062 2194700 ~ 2194971 (-) True G488102
TU560007 lncRNA upstream 202472 2195110 ~ 2195384 (-) True G488103
TU560008 lncRNA upstream 205099 2197737 ~ 2198034 (-) True G488104
CI01000340_01952181_01975472.mRNA mRNA downstream 14288 1951515 ~ 1976286 (-) True CI01000340_01952181_01975472
CI01000340_01916883_01917263.mRNA mRNA downstream 73222 1915653 ~ 1917352 (-) True CI01000340_01916883_01917263
CI01000340_01894781_01909824.mRNA mRNA downstream 79215 1894674 ~ 1911359 (-) True CI01000340_01894781_01909824
CI01000340_01839512_01846883.mRNA mRNA downstream 143681 1838277 ~ 1846893 (-) True CI01000340_01839512_01846883
CI01000340_01785945_01793672.mRNA mRNA downstream 196620 1785827 ~ 1793954 (-) True CI01000340_01785945_01793672
CI01000340_02008099_02012700.mRNA mRNA upstream 15384 2008022 ~ 2012700 (-) True CI01000340_02008099_02012700
CI01000340_02172629_02189732.mRNA mRNA upstream 179045 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02293072_02301920.mRNA mRNA upstream 300376 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02329631_02332000.mRNA mRNA upstream 336968 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02333476_02337529.mRNA mRNA upstream 340464 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
TU559770 other downstream 88302 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1199165 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 1664858 325334 ~ 325716 (-) False G485786
TU557450 other downstream 1664911 325334 ~ 325663 (-) True G485786
TU557403 other downstream 1908479 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 2013167 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2514558 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2607582 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 3328115 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 4190652 6183290 ~ 6220642 (-) True G489516

Expression Profile