RNA id: TU560007


Basic Information

Item Value
RNA id TU560007
length 275
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G488103
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2195110 ~ 2195384 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGTAAGCAGCCCAGCTGCAATTGCTTTGGCAATACAAATGTATCGTTTTTGTCATGCCAATAAAGCACACTTGAATTGAATTGAATTGACTAAAATAACACAAGACGTGTCACTCGTATTGTTTTGAATGGGAGAAAGTGCAACGCACAATATGTTGGAATAAGTCCCACCTTCTAAATAAGAGCCAATCGCCGATCGGTAAAGTCATCGCGTCACTGCAGCTGCCGTTAGAAGCTCCGGTTTCTATAGAAACAGTCAGACGCGTGCCTCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560006 lncRNA downstream 139 2194700 ~ 2194971 (-) True G488102
TU560005 lncRNA downstream 560 2194326 ~ 2194550 (-) True G488101
TU560000 lncRNA downstream 28870 2165992 ~ 2166240 (-) True G488096
TU559871 lncRNA downstream 202472 1990574 ~ 1992638 (-) True G487971
TU559833 lncRNA downstream 220236 1974362 ~ 1974874 (-) True G487942
TU560008 lncRNA upstream 2353 2197737 ~ 2198034 (-) True G488104
TU560018 lncRNA upstream 17805 2213189 ~ 2218915 (-) True G488113
TU560019 lncRNA upstream 25702 2221086 ~ 2221613 (-) True G488114
TU560025 lncRNA upstream 31969 2227353 ~ 2229293 (-) True G488119
TU560048 lncRNA upstream 109067 2304451 ~ 2304769 (-) True G488142
CI01000340_02172629_02189732.mRNA mRNA downstream 5378 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02008099_02012700.mRNA mRNA downstream 182410 2008022 ~ 2012700 (-) True CI01000340_02008099_02012700
CI01000340_01952181_01975472.mRNA mRNA downstream 218824 1951515 ~ 1976286 (-) True CI01000340_01952181_01975472
CI01000340_01916883_01917263.mRNA mRNA downstream 277758 1915653 ~ 1917352 (-) True CI01000340_01916883_01917263
CI01000340_01894781_01909824.mRNA mRNA downstream 283751 1894674 ~ 1911359 (-) True CI01000340_01894781_01909824
CI01000340_02293072_02301920.mRNA mRNA upstream 97630 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02329631_02332000.mRNA mRNA upstream 134222 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02333476_02337529.mRNA mRNA upstream 137718 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02341068_02348409.mRNA mRNA upstream 145119 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02567081_02567521.mRNA mRNA upstream 371353 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
TU559770 other downstream 292838 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1403701 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 1869394 325334 ~ 325716 (-) False G485786
TU557450 other downstream 1869447 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2113015 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1810421 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2311812 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2404836 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 3125369 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3987906 6183290 ~ 6220642 (-) True G489516

Expression Profile