RNA id: TU559855


Basic Information

Item Value
RNA id TU559855
length 394
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G487957
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2338594 ~ 2338987 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCGGCTTCATTCTACTCATTGTGAAGCTCTCCCAAGTGTTTGAATCGGCTTTACTTGACGGTATTCTCAAGCTTGCGGTCATCCCTGTTGCTTGTGCACCTTTGCCTACCCAATTTCTTCCTTCCAGTCAACTTTGCATTTAATATGCTTTGATACATCACTCTGTAAACAGCCACCCCATTCAGTAATGACCTTCTGTGATTTACTCTCTTTGTGGAGGGTGTCAATGATTGTCTCCTGGACCATTGCCAAGTCAGCAGTCTTCCCCATTAGTGTGGTTTCAAAGAACAAAAGATACCCGGAATTTATACTGTAGGGATGGTCATTTAATCAAACTCAAATGTAAATATTCTAATATTTTGAGATACTGGATTTTGGACTTTCATTAGCTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU559856 lncRNA downstream 103 2337889 ~ 2338491 (-) True G487958
TU560048 lncRNA downstream 33825 2304451 ~ 2304769 (-) True G488142
TU560025 lncRNA downstream 109301 2227353 ~ 2229293 (-) True G488119
TU560019 lncRNA downstream 116981 2221086 ~ 2221613 (-) True G488114
TU560018 lncRNA downstream 119679 2213189 ~ 2218915 (-) True G488113
TU559859 lncRNA upstream 551 2339538 ~ 2339879 (-) True G487961
TU560055 lncRNA upstream 66325 2405312 ~ 2427227 (-) False G488147
TU560054 lncRNA upstream 79097 2418084 ~ 2427227 (-) True G488147
TU560101 lncRNA upstream 137968 2476955 ~ 2477260 (-) True G488179
TU560106 lncRNA upstream 160609 2499596 ~ 2499844 (-) True G488184
CI01000340_02333476_02337529.mRNA mRNA downstream 1065 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 6594 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 35647 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02172629_02189732.mRNA mRNA downstream 148862 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02008099_02012700.mRNA mRNA downstream 325894 2008022 ~ 2012700 (-) True CI01000340_02008099_02012700
CI01000340_02341068_02348409.mRNA mRNA upstream 1516 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02567081_02567521.mRNA mRNA upstream 227750 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02936853_02939837.mRNA mRNA upstream 596650 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 1003314 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 1040299 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
TU559770 other downstream 436322 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1547185 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2012878 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2012931 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2256499 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1666818 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2168209 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2261233 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2981766 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3844303 6183290 ~ 6220642 (-) True G489516

Expression Profile