RNA id: TU560106


Basic Information

Item Value
RNA id TU560106
length 249
lncRNA type antisense_over
GC content 0.42
exon number 1
gene id G488184
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2499596 ~ 2499844 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGTTCCTCCAAAAAAAAGAAATGAGCAATGAAAAATTCCCTTTATCCATAAATTATATAGGAGTGTTGACACCTGTGTCATTTAAGGATGTTGTACAGAAAGTTTGCAAACCTGAATTTGTGCCTGTCGCTGTAAGAGGGCTCTCTGCACTGCTATCAGAGTACTGTCTCTTTGAGAAGAGGAAATACATCCTGCTGGAACAGAGTGGTGCTCCTCTCTTGATGACTCTGAACCCTCTCCACAAACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560101 lncRNA downstream 22336 2476955 ~ 2477260 (-) True G488179
TU560055 lncRNA downstream 72369 2405312 ~ 2427227 (-) False G488147
TU560054 lncRNA downstream 72369 2418084 ~ 2427227 (-) True G488147
TU559859 lncRNA downstream 159717 2339538 ~ 2339879 (-) True G487961
TU559855 lncRNA downstream 160609 2338594 ~ 2338987 (-) True G487957
TU560108 lncRNA upstream 338 2500182 ~ 2500405 (-) True G488186
TU560109 lncRNA upstream 1441 2501285 ~ 2501500 (-) True G488187
TU560115 lncRNA upstream 9063 2508907 ~ 2509117 (-) True G488193
TU560118 lncRNA upstream 11602 2511446 ~ 2511668 (-) True G488196
TU560119 lncRNA upstream 15259 2515103 ~ 2515304 (-) True G488197
CI01000340_02341068_02348409.mRNA mRNA downstream 151119 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 162067 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 167596 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 196649 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02172629_02189732.mRNA mRNA downstream 309864 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02567081_02567521.mRNA mRNA upstream 66893 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02936853_02939837.mRNA mRNA upstream 435793 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 842457 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 879442 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 903379 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
TU559770 other downstream 597324 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1708187 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2173880 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2173933 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2417501 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1505961 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 2007352 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2100376 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2820909 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3683446 6183290 ~ 6220642 (-) True G489516

Expression Profile