RNA id: TCONS_00020482


Basic Information

Item Value
RNA id TCONS_00020482
length 1033
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_010425
representative False

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6512346 ~ 6556501 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTAGGTATTGAGTCCTCAACCTGCTTAAAAGGAGGTAGAGAAGAAGCAGTGGACAGGAAGTAGTGTGCTCAGCACGTGGAATGGCTTCTTCACTTCGCTGTGCTTTGTTGGGGCTctcatttgagaaacatttttgttCTTATACTCAGATTTTTGTCAAACAGAGTTGAGCCAGAGGAACAGTCCAGGGTGGCAGAGGGACACACCAGGAAGGAGCAGGAGAGATGACCCAGGGAGGATCCAGGGACGACCCAGAGACAATCCTTAGAACTCAAAGTCAAAAGTAAGACCAAAGACCAAAGGGAGTGGGAGATTGAACAAGAAGTCTGGAGACTTTAAGTTGGATAGAACTGGCAGGGCGATGTTGCTGGCTCATACACCTGGTCAGACAAAATATCAAGctgaGGAACTCAGTGGCTTCACGCTGCGGCTGAAATAGGACCCCAGTTACCACAGCAGCCCCACAGAGTGTTTAGGTGTTCTTGGATGGACGATTTATTTTGGAATGGAGCTCCCCTCTCTCATCATGTCAACTAATTTCTGGCAATTTCTGGCATCTGTGTCCTTCCTCAGTGAAGTGGAGGGCTGCTGGCAGCTGTGTTTTACACCACACTGCCCTGAATACTCTATCAACCTCCTGCTGTGCCACACATCATCACATGATCACAAAGACCCGAGACCTGAGACTCTTCATCTCTCGGTGTCTCTTTCACCTATGAACACAATATGATAAATCTCGTAGTAAATACTACATTTACTAAAAGAAAGTCAAGAAGTGCCCCTAGACAGATGTGTTTACCCATTGTAAGGACCACCCATTGGCCCAAAAACAAAACCCAACGGTTAAGGTTAAGGTACGCTGTAAGGTTTAAGGTTTAAATTCACTCCTTTTGTTTATTTAGGATCAATTTAATTTCATGATTTATTTGACTCCAGTTTTAAATTATTCTCAAATTTAAGTTGGAATATTAGTTTTGTTACGATTTTATTAAGATTTGCCTGGTGGTTAtgcatgcactgcaaaaaatgctt

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0010866 regulation of triglyceride biosynthetic process biological_process
GO:0010867 positive regulation of triglyceride biosynthetic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0045495 pole plasm cellular_component
GO:0071595 Nem1-Spo7 phosphatase complex cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0043186 P granule cellular_component
GO:0060293 germ plasm cellular_component
GO:0034584 piRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00022097 lncRNA downstream 49595 6476016 ~ 6484227 (-) False XLOC_010424
TCONS_00022096 lncRNA downstream 49595 6476016 ~ 6484227 (-) True XLOC_010424
TCONS_00022095 lncRNA downstream 57095 6476016 ~ 6476727 (-) False XLOC_010424
TCONS_00021781 lncRNA downstream 142543 6387627 ~ 6391279 (-) True XLOC_010422
TCONS_00022094 lncRNA downstream 147180 6383530 ~ 6386642 (-) True XLOC_010421
TCONS_00020485 lncRNA upstream 31521 6588022 ~ 6590352 (-) False XLOC_010426
TCONS_00020486 lncRNA upstream 31521 6588022 ~ 6590763 (-) False XLOC_010426
TCONS_00020484 lncRNA upstream 31521 6588022 ~ 6591170 (-) False XLOC_010426
TCONS_00020487 lncRNA upstream 33102 6589603 ~ 6590430 (-) False XLOC_010426
TCONS_00022100 lncRNA upstream 33102 6589603 ~ 6590871 (-) True XLOC_010426
TCONS_00020478 mRNA downstream 109004 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA downstream 109006 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020477 mRNA downstream 142547 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 156150 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 328032 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020489 mRNA upstream 246969 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 247044 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 263947 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 263947 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 380685 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 663133 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 675841 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1426405 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1472193 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1814437 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 272051 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 663491 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1137380 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1138293 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1731270 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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