RNA id: TU560118


Basic Information

Item Value
RNA id TU560118
length 223
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G488196
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2511446 ~ 2511668 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTAGTGCCTATATCTCAAAATTTCAGGGATACCTTGTGCTTTCGCTCAGTATGCAGTTGTTCCTGATGGCTTTGCTGTGTTGTGATGAGGGTTTGCTGTGTGTTTCTCTCAGCCTGAGCAAGCTTTAACTCTAAAGCCTGTTTCTCCTGCAAAGCCCGGGACATTTGCTGCTCTAGTTCACTGTGAACAATAGACAGCTCACCTGTGCAAAAAGAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560115 lncRNA downstream 2329 2508907 ~ 2509117 (-) True G488193
TU560109 lncRNA downstream 9946 2501285 ~ 2501500 (-) True G488187
TU560108 lncRNA downstream 11041 2500182 ~ 2500405 (-) True G488186
TU560106 lncRNA downstream 11602 2499596 ~ 2499844 (-) True G488184
TU560101 lncRNA downstream 34186 2476955 ~ 2477260 (-) True G488179
TU560119 lncRNA upstream 3435 2515103 ~ 2515304 (-) True G488197
TU560123 lncRNA upstream 7164 2518832 ~ 2519559 (-) True G488201
TU560132 lncRNA upstream 42848 2554516 ~ 2558467 (-) False G488207
TU560133 lncRNA upstream 42848 2554516 ~ 2558467 (-) True G488207
TU560177 lncRNA upstream 121905 2633573 ~ 2633817 (-) True G488247
CI01000340_02341068_02348409.mRNA mRNA downstream 162969 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 173917 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 179446 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 208499 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02172629_02189732.mRNA mRNA downstream 321714 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02567081_02567521.mRNA mRNA upstream 55069 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02936853_02939837.mRNA mRNA upstream 423969 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 830633 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 867618 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 891555 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
TU559770 other downstream 609174 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1720037 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2185730 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2185783 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2429351 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1494137 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1995528 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2088552 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2809085 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3671622 6183290 ~ 6220642 (-) True G489516

Expression Profile