RNA id: TU560123


Basic Information

Item Value
RNA id TU560123
length 390
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G488201
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2518832 ~ 2519559 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCTCTAAAACTGTCAGCTTTTGTTCCTTCTCCTCTCCCACTCGCTTCAAACTGTTGTTTTCAAACTCGGCTCTCTTCACAGCTGTACGGAGTTCGTGATTAGAAGTTTGGATGGCCTCTTTCTCTCTCACAGCATCCCCTAAAGCTCTCTTCAGTTCCAAGCCCTCACGCCGCTGAGCGTCCCTGTCCTGCAAACACTCCCTCAGCTCTCGATGAGCCTCGATCAGTTCCTTACGGCCAGAATCCCTGCTTTCTTCCACCTCACTCAGTTCCCTCCTCAAACGCTCCACCTGAAAGAGACAGAGATTAGACTGAAAGATTAAATGAATTCAAATAGTACTATAAATACAAAAGGAGTGATTGGTCACAATTTGAGTGCAATGGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560119 lncRNA downstream 3528 2515103 ~ 2515304 (-) True G488197
TU560118 lncRNA downstream 7164 2511446 ~ 2511668 (-) True G488196
TU560115 lncRNA downstream 9715 2508907 ~ 2509117 (-) True G488193
TU560109 lncRNA downstream 17332 2501285 ~ 2501500 (-) True G488187
TU560108 lncRNA downstream 18427 2500182 ~ 2500405 (-) True G488186
TU560132 lncRNA upstream 34957 2554516 ~ 2558467 (-) False G488207
TU560133 lncRNA upstream 34957 2554516 ~ 2558467 (-) True G488207
TU560177 lncRNA upstream 114014 2633573 ~ 2633817 (-) True G488247
TU560182 lncRNA upstream 128795 2648354 ~ 2654655 (-) True G488251
TU560192 lncRNA upstream 139092 2658651 ~ 2751966 (-) False G488259
CI01000340_02341068_02348409.mRNA mRNA downstream 170355 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 181303 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 186832 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 215885 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02172629_02189732.mRNA mRNA downstream 329100 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02567081_02567521.mRNA mRNA upstream 47178 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02936853_02939837.mRNA mRNA upstream 416078 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 822742 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 859727 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 883664 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
TU559770 other downstream 616560 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1727423 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2193116 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2193169 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2436737 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1486246 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1987637 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2080661 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2801194 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3663731 6183290 ~ 6220642 (-) True G489516

Expression Profile