RNA id: TU560133


Basic Information

Item Value
RNA id TU560133
length 679
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G488207
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2554516 ~ 2558467 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCGAACCTGACTGATCGCAGCATGGCGGCCAACATGCACCAGCCACCGAAGCCATACCTGAGAAGACGACACATTCACTACCTCCAGCTGTTCCACTTTACGTGGTCCTGAGACAGAAAAGGAGAAGAAGAGCCTGCGCAGCTGTAGTTCCCCCTCCTATCACTCCAACAGACACCTCGGTTCCCGCACGGCTGCAGTACACATGGGTTCTCCACTAGACGGCAACAGAGGATCAATCGAGACCTTGCATTTGAATTACCCTATCTGACAAAGGTGGTTCCTCCTGTAGCCTCGGCATACACCTCCATTCAAGCAGGGATTTGGCTCACATCCATCCTGTTCTGCAGAACAAACACACATCTGTATCATAAGATGGGAAATCCTTCATTCTGAGAGGTGGGCTGTTTGTAGGAGATAGGTATGAAGTGTTTTGTGTCTCAAAACAGATTTACTGTAAGTCAGAATCAAGGGGAAAGCAAATTATGCCGAATGACAAAAACAGGAAACAAACTGGAAAATGAGTTGGGAATCAAAGCTCAACAAAAGCAGGTTTGTTTTTCTTTCTATAGTTACCATATTGTAGCACATCTTTATGTAAGTTCTGGAGTTAGCAAGTATGATTTGTTATGTTCAAAAAGGCCCTGTCTGCTTTCTTGTAGATGCTTCATAAATCCTTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560123 lncRNA downstream 34957 2518832 ~ 2519559 (-) True G488201
TU560119 lncRNA downstream 39212 2515103 ~ 2515304 (-) True G488197
TU560118 lncRNA downstream 42848 2511446 ~ 2511668 (-) True G488196
TU560115 lncRNA downstream 45399 2508907 ~ 2509117 (-) True G488193
TU560109 lncRNA downstream 53016 2501285 ~ 2501500 (-) True G488187
TU560177 lncRNA upstream 75106 2633573 ~ 2633817 (-) True G488247
TU560182 lncRNA upstream 89887 2648354 ~ 2654655 (-) True G488251
TU560192 lncRNA upstream 100184 2658651 ~ 2751966 (-) False G488259
TU560216 lncRNA upstream 143934 2702401 ~ 2769316 (-) True G488276
TU560193 lncRNA upstream 175175 2733642 ~ 2751966 (-) True G488259
CI01000340_02341068_02348409.mRNA mRNA downstream 206039 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 216987 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 222516 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 251569 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02172629_02189732.mRNA mRNA downstream 364784 2171683 ~ 2189732 (-) True CI01000340_02172629_02189732
CI01000340_02567081_02567521.mRNA mRNA upstream 8270 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02936853_02939837.mRNA mRNA upstream 377170 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 783834 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 820819 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 844756 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
TU559770 other downstream 652244 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1763107 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2228800 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2228853 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2472421 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1447338 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1948729 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 2041753 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2762286 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3624823 6183290 ~ 6220642 (-) True G489516

Expression Profile