RNA id: TU560177


Basic Information

Item Value
RNA id TU560177
length 245
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G488247
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2633573 ~ 2633817 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGCAAGACTACGACTGCTTCATCCAATGGTTCTGTGCATCACTGCGCAACACCCTATGCGTATGAGAAGGGTTCGTAGTCTTTTTATTTGAGCTCCGTGAGATGACGCATATTACACCTAGGAACATTCTGTTGCTGTTCCCGGTTACAGCGGAAGGACAGCATTTATTGATTTTACTACATGAAAGTAGCATTTACTGTATACAATACCTTTCAGCCATTCACCATACAGCACAGCCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560132 lncRNA downstream 75106 2554516 ~ 2558467 (-) False G488207
TU560133 lncRNA downstream 75106 2554516 ~ 2558467 (-) True G488207
TU560123 lncRNA downstream 114014 2518832 ~ 2519559 (-) True G488201
TU560119 lncRNA downstream 118269 2515103 ~ 2515304 (-) True G488197
TU560118 lncRNA downstream 121905 2511446 ~ 2511668 (-) True G488196
TU560182 lncRNA upstream 14537 2648354 ~ 2654655 (-) True G488251
TU560192 lncRNA upstream 24834 2658651 ~ 2751966 (-) False G488259
TU560216 lncRNA upstream 68584 2702401 ~ 2769316 (-) True G488276
TU560193 lncRNA upstream 99825 2733642 ~ 2751966 (-) True G488259
TU560250 lncRNA upstream 133351 2767168 ~ 2773417 (-) True G488306
CI01000340_02567081_02567521.mRNA mRNA downstream 65930 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 285096 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 296044 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 301573 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 330626 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02936853_02939837.mRNA mRNA upstream 301820 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 708484 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 745469 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 769406 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 772657 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
TU559770 other downstream 731301 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1842164 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2307857 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2307910 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2551478 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1371988 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1873379 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1966403 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2686936 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3549473 6183290 ~ 6220642 (-) True G489516

Expression Profile