RNA id: TU560182


Basic Information

Item Value
RNA id TU560182
length 1101
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G488251
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2648354 ~ 2654655 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACACTCTAAAGTTGTTCTGAGTCCCCAAAGCACTTCCTCCAGGAAGTATTACTAATTAGCGATTGATTGGACTCAACCCATTGATCGCTAACAGACCATGACTGGTCATTTGCTCAGTGTCGCTGGTACAGCAGAGACTCACAATGAGCTGCTATCCAGCTCCAGTAATGAGCTAAATAAAGGTCTAAATGGATAGATCTATGCATGCAGTGACCCTGCTAGAACTCTGGCTTGAGATGGCATTTTTAGGACATGAAATATGTTCTGTTTTGTCAGAATTATTTACCTGGACTCTGTATGGGTTCTTGGGATCCATGGTGAAGTTTTTGCACCCAGCATGGCAGGGTGAGATGTACTCAATGTTGTTTTCCCCACACACTGGGTTAAAGGTGCTGCTGGGACATGAGCAGTTTGCGCTACAGGACAGAAAAAGCCCATTGGTGGCATTAGATGTTTTGGGATAAACACCAGCAACATCTTGTGTGGGGCAGCCCATGAAGAAGAGAGGCACACAGCAGGAGACGGAGATGGTGAGCATTACAACAGAGAAACGTGGAATGGCTCTGAATGACAAACCCCAGCGTTTCATAATCAGACCCCCAAGCAACATCCCCACGGCAACGGATGGCAGGTTTAAAGCACCAATAAGAAGGCTGCTGTAGGCTGCAGTGGCACTGTACTGGCGCTCCAGGAACTTGTTGAGGAAGGTGGCAAGTCCAGCGATCACAGAGGAGAAACAGCACTGGGTCAGAACCAGCAGCATAAAAATAGGACTTAGCAACAGTCTGACGAACATCTTAGGGAACATTTTAAAGAAATCCAGCATGGAGCTTTCAGACTTCTTGGGGTCTTCTTTCATGATGTCACCATCCAGTTCAAAAGACTTCTCTACATGAAGCGATTTGGGGAAGAAGAAGTAAGGGATTGAGGTGAGAGCTAGACCTCCAGCAGTGATGAGCAGACCCATCCACCATGCACCAACCCAGCGAGGGTCAGAGGGGGTCAATTCCAATGCCTCCCCTAGAGGAAAGAAACTGGATGTAACACTGCAGCTGTCTACAATTAAAGGATTAGTTCACTTTAAAATGAAAATTACCCCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560177 lncRNA downstream 14537 2633573 ~ 2633817 (-) True G488247
TU560132 lncRNA downstream 89887 2554516 ~ 2558467 (-) False G488207
TU560133 lncRNA downstream 89887 2554516 ~ 2558467 (-) True G488207
TU560123 lncRNA downstream 128795 2518832 ~ 2519559 (-) True G488201
TU560119 lncRNA downstream 133050 2515103 ~ 2515304 (-) True G488197
TU560192 lncRNA upstream 3996 2658651 ~ 2751966 (-) False G488259
TU560216 lncRNA upstream 47746 2702401 ~ 2769316 (-) True G488276
TU560193 lncRNA upstream 78987 2733642 ~ 2751966 (-) True G488259
TU560250 lncRNA upstream 112513 2767168 ~ 2773417 (-) True G488306
TU560247 lncRNA upstream 123923 2778578 ~ 2780461 (-) True G488303
CI01000340_02567081_02567521.mRNA mRNA downstream 80711 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 299877 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 310825 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 316354 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 345407 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02936853_02939837.mRNA mRNA upstream 280982 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 687646 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 724631 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 748568 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 751819 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
TU559770 other downstream 746082 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1856945 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2322638 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2322691 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2566259 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1351150 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1852541 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1945565 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2666098 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3528635 6183290 ~ 6220642 (-) True G489516

Expression Profile