RNA id: TU560248


Basic Information

Item Value
RNA id TU560248
length 425
lncRNA type antisense_over
GC content 0.37
exon number 1
gene id G488304
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2785667 ~ 2786091 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTGAACTTTAAAATGTAAAATGTAATCCGAGAAGATTATGTGTTTTTTGTGCACTACTAGAGTGAATTGTGGATACTTTGTTTACTTCAAGCAAGTTTCTGAGTTTCTGTTTCTCTGTGTTTGTGAGTCAGTGTCATTTTGGAAGTGCTTGATGGAAAATGTTAGTGTTCTTGTTATTTAAAGAAGTAGATTGAACCACTAGTCACCTGGTGCCATGAATTACAACTGAAACAGTCACTTCACTTTGGATCAGGGCCATTATTATGGTCTCGTGCAAAAGAACGAAAGAGATTAATACCAGTTTAGTTTTAAAGCATTACTGTGAATCCAATGGAACATCAAGAAGAGGTTACATACACAGTCTTAATACCAGTGTGGGAGGTTTGGGGGGTCTGGTGTTAAACTGAGTTTCAAAATACGATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560243 lncRNA downstream 1928 2781513 ~ 2783739 (-) True G488302
TU560247 lncRNA downstream 5206 2778578 ~ 2780461 (-) True G488303
TU560250 lncRNA downstream 12250 2767168 ~ 2773417 (-) True G488306
TU560216 lncRNA downstream 16351 2702401 ~ 2769316 (-) True G488276
TU560192 lncRNA downstream 33701 2658651 ~ 2751966 (-) False G488259
TU560274 lncRNA upstream 19922 2806013 ~ 2806242 (-) True G488325
TU560303 lncRNA upstream 46892 2832983 ~ 2833205 (-) True G488346
TU560316 lncRNA upstream 69168 2855259 ~ 2858243 (-) True G488359
TU560329 lncRNA upstream 119894 2905985 ~ 2908619 (-) False G488371
TU560330 lncRNA upstream 119894 2905985 ~ 2908440 (-) True G488371
CI01000340_02567081_02567521.mRNA mRNA downstream 218024 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 437190 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 448138 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 453667 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 482720 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02936853_02939837.mRNA mRNA upstream 149546 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 556210 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 593195 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 617132 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 620383 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
TU559770 other downstream 883395 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 1994258 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2459951 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2460004 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2703572 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1219714 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1721105 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1814129 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2534662 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3397199 6183290 ~ 6220642 (-) True G489516

Expression Profile