RNA id: TU560274


Basic Information

Item Value
RNA id TU560274
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G488325
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2806013 ~ 2806242 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAATTCTCTTTCCATTCATCGTCTGTGAAGTAGAGCAGGACAACGTCTCACCAGTCCTTGTTTCAGACTGGTTTTGGGGGCAGGAAGGGGTGCTTTTACTGCTTGATAAATACAAGCAGCACGACTTCAACGGTTTACGTGCTCGTCGTCGCCTAATTAGGACCTGAAATAGATATTAAGTCTGCATTTAAAACAAAGAAAAGGAGGATGGTTAATATGCAACAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560248 lncRNA downstream 19922 2785667 ~ 2786091 (-) True G488304
TU560243 lncRNA downstream 22274 2781513 ~ 2783739 (-) True G488302
TU560247 lncRNA downstream 25552 2778578 ~ 2780461 (-) True G488303
TU560250 lncRNA downstream 32596 2767168 ~ 2773417 (-) True G488306
TU560216 lncRNA downstream 36697 2702401 ~ 2769316 (-) True G488276
TU560303 lncRNA upstream 26741 2832983 ~ 2833205 (-) True G488346
TU560316 lncRNA upstream 49017 2855259 ~ 2858243 (-) True G488359
TU560329 lncRNA upstream 99743 2905985 ~ 2908619 (-) False G488371
TU560330 lncRNA upstream 99743 2905985 ~ 2908440 (-) True G488371
TU560284 lncRNA upstream 119512 2925754 ~ 2928685 (-) True G488334
CI01000340_02567081_02567521.mRNA mRNA downstream 238370 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 457536 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 468484 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 474013 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 503066 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02936853_02939837.mRNA mRNA upstream 129395 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 536059 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 573044 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 596981 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 600232 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
TU559770 other downstream 903741 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2014604 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2480297 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2480350 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2723918 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1199563 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1700954 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1793978 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2514511 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3377048 6183290 ~ 6220642 (-) True G489516

Expression Profile