RNA id: TU560330


Basic Information

Item Value
RNA id TU560330
length 2330
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G488371
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2905985 ~ 2908619 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGGATGCATATCAACTTCGTCTGAACAAGTGAAAACAAAACCAGTATTTCATGCCATCAAAAAATCTGTAAATACCTTAAAACATTAAAAGGTACATTAAAAATATTAAATGAAGTGCACAAGCATCTAAATAGTCTAAGTAACAAATAGCTGTCAAGGAATGTAAATTGTAATATTCATTTCAACTCCTCACTGGTTTGTTACCCTTCGCACATTCTTACCACAGCTTGAGAGTGCTATAACCATGCAGAAAATCCCCCTGAGGAACGTTAAAAATTATTATAAAATGGTTAGTTCCTGTCCTTGATTTTGATTGGTCAATAGCTGTGTTTTATTCACGATAAAACACGACTATATCCGCTTCACCCAACAGTTCTGTATCACTACACAACACCTTTAGTACCACACATAGCAACGTAAACTGTATGTTCTCAATTGATATTGTTCATTGAAGCTTACTGTATTATGTAGAAGAGTGTTGTGAGAAAATAATCGAGTGAGATTTAGCATTTTCCTTCAGGTCAGTCCTATGTTCATAATAAAAAATCCGTTTAAATGTCCGATCAATCGTCTTGTCCTTTTAACATTTAAGGGGTTTTCCAGTGACTGACAGCACTAGTCAAAGCATTTGTCAGTTGCGTCTTGTTCCGTTTTCAAAACAATTACGTTTTTTCAATATAAAAGTCTTCGCTACTGACTGACACACTCATAAAGACTGTCTTTGCCGCCATCTAATGGCGTAATAATGTAACTTCTGTTGCTGTTCACAGTCAGTGACTATTTTTTTCTGGCGGAAAGAAGGTTTTTAGAAAAAGTTTACTTCATGAAAGTTGCATTGATACATATTTCTGGCTTTAATATTTGTATTGTGTGGTAACCGTTTTATAAAAGCAATAAGTGTTGTTTTGATACCAAATATGAAATTCATTAGCTTCACACTGATTTCATTAAGAATGTGCACTAAGGAAGTGCTTACAGTTTACAAAGAACGAGTCAAAGCATGTCATTAGCAAACAGGTAATATGCTAACAAAGACAACATTGATTTTTAAAAGGCAGCACACAGTCTTACACATAAGTTACGCCTTCTTGAAACTTGATGGAGTCTTATCTCAATTGTGATTTGACAACTGACTGATACATAACTTTCACTAGTACCGTCCCAAATAACTTTCACTTTAACATGCCCAAATCACGTGCTTGGTGATACATGAGGCTGTTTGAAGTTCCTGATCTTTAATTGACCATACATAATCAGGAAGTGTGGGCTGAATCACTTGAACTGATGAAAAATATTCAATGGCTCACTCAGAACTCAGACTTTGCGCTCATAGAGCTCTCATGTGTACCTTTCAGGTCCCCACTTGTAACGCCGGACCCCCCTGATTTGTCTCTGCAGAAAAGCCTGCGAACGCTTCCCCTGAACTTCTCAGCTGCAAACAGGTAGACCAGTGGATCCAAAGCCCCATTCATGCAGGTTAAAGAGGAAGTAAGACGGTTAGCCAGGGCTAGCCCTCTTTTGATTTGGCAGGATAGATCTGGGTGTCCGTAACCCAAGATGAAGGTCGCACGGCTTAAGTGATAGGGCAAAAAGCATACTATGTAGATGAGCATGACCAGACCGATCGTGCGTAGAGCTCGGAGTTTCAGCGCCGGCTCTAGCCTCGAACCTTTTCGCAGACTATGCACTATTAGCAGGTAGCAAGAAAGGGTGGCAATGAAAGGCGGCATGAAGGCTACGGCCAGGGAGACGAGAGCACGTCGTGAGGCCTTTTCTCTGTACAGCTGCAAGCATACAGTAGAGCCATTGACTTCTGCGGTCTGCTTGGTGACCAGTAGGGGCGCCATAGACACTATCACCAAAGCCCAAAGCGCAAAACTGGCAATGTGAGCGTAACGAGGGCGTCTGACCTTGAGAGAACGTACAGCGTGTACCACAGCAAGATATCTGTCACCTGCAACACAGGCCAGGAAGTACAAACTGGCATACATGTTGACATAAAAAAAGAAGCCTGCGAGACGGCAGGGGATTTCGCCAAATGGCCAATGTCCCCCCGTTAAATGATAAGTGGCCCTGAGAGGTAAAACAAAGATGTAAAACAGGTCAGCCACAGCAAGATGGAGCAGGAAGACATTGGCTGGAGAAGAGTTGCCTCTCTGGCGGGCGAAGATCCACAGGGCAAGGCTATTGCCGTTCAGTGCAAGAAGGAAAACTACGATGTAGTAGAATCCAAAGATCATATTCTCCACTGTATTGTCCACAGGTGGACAGCTCTCCATGGATCGATTGGGCAGCAAGGTGGGAAGTTCTGTAAGGGGGAACTCCATCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560316 lncRNA downstream 47742 2855259 ~ 2858243 (-) True G488359
TU560303 lncRNA downstream 72780 2832983 ~ 2833205 (-) True G488346
TU560274 lncRNA downstream 99743 2806013 ~ 2806242 (-) True G488325
TU560248 lncRNA downstream 119894 2785667 ~ 2786091 (-) True G488304
TU560243 lncRNA downstream 122246 2781513 ~ 2783739 (-) True G488302
TU560284 lncRNA upstream 17314 2925754 ~ 2928685 (-) True G488334
TU560338 lncRNA upstream 25902 2934342 ~ 2934655 (-) True G488378
TU560295 lncRNA upstream 34781 2943221 ~ 2945494 (-) False G488341
TU560296 lncRNA upstream 34830 2943270 ~ 2945567 (-) True G488341
TU560344 lncRNA upstream 55858 2964298 ~ 2964585 (-) True G488384
CI01000340_02567081_02567521.mRNA mRNA downstream 338342 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 557508 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 568456 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 573985 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_02293072_02301920.mRNA mRNA downstream 603038 2293014 ~ 2302947 (-) True CI01000340_02293072_02301920
CI01000340_02936853_02939837.mRNA mRNA upstream 27197 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_03342324_03363204.mRNA mRNA upstream 433861 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 470846 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 494783 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 498034 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
TU559770 other downstream 1003713 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2114576 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2580269 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2580322 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2823890 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 1097365 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1598756 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1691780 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2412313 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3274850 6183290 ~ 6220642 (-) True G489516

Expression Profile