RNA id: TU560353


Basic Information

Item Value
RNA id TU560353
length 554
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G488392
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 2981344 ~ 3053730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTGGTGGACTTTCATGGTCAGATGGTCACCTGTCCTCCAAAATAAAATGTCATTGGCAAGACGACAGCTTCAAAGAACCAGACAAGACTTTTTAGTATGATGCAAGACAGACCAAGAGTCCTTGCGTCCTGAAGTCCGGGTACAGTAACATCCTTGGATATTTCAAGCGAGTTTTGCATTTTGAGTTTTCAGGTTGTTTATAGGGGTTGAACTTGGGCTTAGGAGCCACAACAGGAGCAAACTTCTTAGGAGCCTGTTGCTGGGAAACAGAAATGCTGGTGGTACCCATAGGTAAGCTGGTCTCCATTCGTGCACTCACATGACCTTGCTGGTCACCATCATTATGGCCACCCCACATGTTTCTGGAGTCAAGAAATCTGATTCTATTTCAGGAGCAAAAATGAATCACCAGATGATCACAGACCTTGCTTTCTAAGAATCACACAGTTTCAAATCCCCACTTAAAGTGAAACTTCTTTTTCCTAAATCTGGGAGAGTAACAGGCAGTGACGTCAGAGGGCGAAATTCCAGCCGGCAGCACACACACTTACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560348 lncRNA downstream 3028 2978091 ~ 2978316 (-) True G488388
TU560347 lncRNA downstream 3577 2977091 ~ 2977767 (-) True G488387
TU560344 lncRNA downstream 16759 2964298 ~ 2964585 (-) True G488384
TU560296 lncRNA downstream 35777 2943270 ~ 2945567 (-) True G488341
TU560295 lncRNA downstream 35850 2943221 ~ 2945494 (-) False G488341
TU560477 lncRNA upstream 111602 3165332 ~ 3185994 (-) True G488507
TU560504 lncRNA upstream 157661 3211391 ~ 3211624 (-) True G488534
TU560510 lncRNA upstream 161721 3215451 ~ 3215703 (-) True G488540
TU560611 lncRNA upstream 247258 3300988 ~ 3301219 (-) True G488627
TU560516 lncRNA upstream 411582 3465312 ~ 3473302 (-) False G488543
CI01000340_02936853_02939837.mRNA mRNA downstream 41507 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_02567081_02567521.mRNA mRNA downstream 413701 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 632867 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 643815 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 649344 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_03342324_03363204.mRNA mRNA upstream 288571 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 325556 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 349493 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 352744 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
CI01000340_03474617_03478517.mRNA mRNA upstream 420230 3473960 ~ 3478517 (-) True CI01000340_03474617_03478517
TU559770 other downstream 1079072 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2189935 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2655628 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2655681 325334 ~ 325663 (-) True G485786
TU557403 other downstream 2899249 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 952075 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1453466 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1546490 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2267023 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 3129560 6183290 ~ 6220642 (-) True G489516

Expression Profile