RNA id: TU560510


Basic Information

Item Value
RNA id TU560510
length 253
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G488540
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3215451 ~ 3215703 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTACATAGCGACCACTGAACAGACATTTAGAAGTGTATTTTAAAATGCAAAGTATTGAAAATAATAATTAAAAAAAAAAAGCAGTAAACGCTTGCATTTTTTGCAAGACTATAAGTGTGTCCCATTGGGTAATCAAAAGTTCTACACACACTTGCAGTCTTCTCGCCCACTTGAACACTTGAGCCAAATACAGGAAATACGTCATGTAAGTAGACAAGTGGTCAAGTGCAAAGACCGCAAGTGTGGGTATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU560504 lncRNA downstream 3827 3211391 ~ 3211624 (-) True G488534
TU560477 lncRNA downstream 29457 3165332 ~ 3185994 (-) True G488507
TU560353 lncRNA downstream 161721 2981344 ~ 3053730 (-) True G488392
TU560356 lncRNA downstream 170509 3021147 ~ 3044942 (-) True G488395
TU560348 lncRNA downstream 237135 2978091 ~ 2978316 (-) True G488388
TU560611 lncRNA upstream 85285 3300988 ~ 3301219 (-) True G488627
TU560516 lncRNA upstream 249609 3465312 ~ 3473302 (-) False G488543
TU560515 lncRNA upstream 255226 3470929 ~ 3473302 (-) True G488543
TU560629 lncRNA upstream 298762 3514465 ~ 3514967 (-) True G488643
TU560631 lncRNA upstream 301802 3517505 ~ 3517756 (-) True G488645
CI01000340_02936853_02939837.mRNA mRNA downstream 275614 2935637 ~ 2939837 (-) True CI01000340_02936853_02939837
CI01000340_02567081_02567521.mRNA mRNA downstream 647808 2566737 ~ 2567643 (-) True CI01000340_02567081_02567521
CI01000340_02341068_02348409.mRNA mRNA downstream 866974 2340503 ~ 2348477 (-) True CI01000340_02341068_02348409
CI01000340_02333476_02337529.mRNA mRNA downstream 877922 2333102 ~ 2337529 (-) True CI01000340_02333476_02337529
CI01000340_02329631_02332000.mRNA mRNA downstream 883451 2329606 ~ 2332000 (-) True CI01000340_02329631_02332000
CI01000340_03342324_03363204.mRNA mRNA upstream 126598 3342301 ~ 3363619 (-) True CI01000340_03342324_03363204
CI01000340_03379959_03401892.mRNA mRNA upstream 163583 3379286 ~ 3401952 (-) True CI01000340_03379959_03401892
CI01000340_03403238_03403692.mRNA mRNA upstream 187520 3403223 ~ 3403692 (-) True CI01000340_03403238_03403692
CI01000340_03406706_03449487.mRNA mRNA upstream 190771 3406474 ~ 3449487 (-) True CI01000340_03406706_03449487
CI01000340_03474617_03478517.mRNA mRNA upstream 258257 3473960 ~ 3478517 (-) True CI01000340_03474617_03478517
TU559770 other downstream 1313179 1895801 ~ 1902272 (-) True G487884
TU557495 other downstream 2424042 786551 ~ 791409 (-) True CI01000340_00787534_00791061
TU557449 other downstream 2889735 325334 ~ 325716 (-) False G485786
TU557450 other downstream 2889788 325334 ~ 325663 (-) True G485786
TU557403 other downstream 3133356 79415 ~ 82095 (-) True CI01000340_00062787_00080635
TU560772 other upstream 790102 4005805 ~ 4006448 (-) True G488782
TU560860 other upstream 1291493 4507196 ~ 4518120 (-) True G488862
TU560885 other upstream 1384517 4658632 ~ 4659061 (-) True G488887
TU561021 other upstream 2105050 5320753 ~ 5325144 (-) True CI01000340_05321995_05329778
TU561569 other upstream 2967587 6183290 ~ 6220642 (-) True G489516

Expression Profile