RNA id: TU558787


Basic Information

Item Value
RNA id TU558787
length 215
lncRNA type intronic
GC content 0.33
exon number 1
gene id G486996
representative True

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 3388297 ~ 3388511 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAATGAATATGAGCACGGAGAAAAAATGACAACAAACTCCCAAGCACAAGGGAGAAATGCGAAAGAATATTTAAAAGGGCTAATAATACTTTCATTATGTTTACGAGCACTGCAGTCTCATGATAAACGACACGTAGTTTAACACAGAATGAATAAAGACATAGTTTAATTTTTGTCCATTCTCTAAGTCTTTTGTTCATCAGAATAATCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU558782 lncRNA upstream 10794 3377045 ~ 3377503 (+) True G486991
TU558781 lncRNA upstream 11287 3376720 ~ 3377010 (+) True G486990
TU558775 lncRNA upstream 17471 3367021 ~ 3370826 (+) True G486986
TU558752 lncRNA upstream 111183 3276913 ~ 3277114 (+) True G486972
TU558745 lncRNA upstream 131481 3256094 ~ 3256816 (+) True G486965
TU558788 lncRNA downstream 3189 3391700 ~ 3392122 (+) True G486997
TU558618 lncRNA downstream 20662 3409173 ~ 3412656 (+) True G486847
TU558627 lncRNA downstream 133055 3521566 ~ 3523856 (+) True G486856
TU558636 lncRNA downstream 135893 3524404 ~ 3525115 (+) True G486865
TU558828 lncRNA downstream 151257 3539768 ~ 3539996 (+) True G487037
CI01000340_03370316_03378878.mRNA mRNA upstream 9297 3370275 ~ 3379000 (+) True CI01000340_03370316_03378878
CI01000340_03320562_03329314.mRNA mRNA upstream 58615 3320469 ~ 3329682 (+) True CI01000340_03320562_03329314
CI01000340_03291151_03315214.mRNA mRNA upstream 72540 3290647 ~ 3315757 (+) True CI01000340_03291151_03315214
CI01000340_03242647_03264271.mRNA mRNA upstream 123447 3242647 ~ 3264850 (+) True CI01000340_03242647_03264271
CI01000340_03053157_03201683.mRNA mRNA upstream 186614 3053157 ~ 3201683 (+) True CI01000340_03053157_03201683
CI01000340_03471633_03472401.mRNA mRNA downstream 83122 3471633 ~ 3472451 (+) True CI01000340_03471633_03472401
CI01000340_03552817_03560264.mRNA mRNA downstream 163838 3552349 ~ 3560324 (+) True CI01000340_03552817_03560264
CI01000340_03601425_03606062.mRNA mRNA downstream 211982 3600493 ~ 3606138 (+) True CI01000340_03601425_03606062
CI01000340_03616496_03620617.mRNA mRNA downstream 227985 3616496 ~ 3620970 (+) True CI01000340_03616496_03620617
CI01000340_03662829_03666784.mRNA mRNA downstream 274249 3662760 ~ 3666784 (+) True CI01000340_03662829_03666784
TU558577 other upstream 456497 2930091 ~ 2931800 (+) True G486806
TU557142 other upstream 3075052 311792 ~ 312038 (+) True G485516
TU557027 other upstream 3220663 163286 ~ 167634 (+) True G485427
TU556971 other upstream 3274528 106885 ~ 113769 (+) True G485373
TU558935 other downstream 585404 3973915 ~ 3982545 (+) True G487133
TU559057 other downstream 1010908 4399419 ~ 4401496 (+) True CI01000340_04399692_04401164
TU559265 other downstream 1275798 4664309 ~ 4665185 (+) True CI01000340_04660938_04668996
TU561697 other downstream 3305710 6694221 ~ 6700788 (+) False G489634
TU562819 other downstream 5650301 9038812 ~ 9043101 (+) True G490645

Expression Profile