RNA id: TCONS_00022100


Basic Information

Item Value
RNA id TCONS_00022100
length 1269
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id XLOC_010426
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 6588022 ~ 6591170 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgatctgtatgttgaattaacgtcatggcttcacccaatattcaacatgtttggttaccatggtatcgGAGGACTCTGCGCACGCGGCCGCGCGCagcgcttcacttcacttaattacgaacacctgacctgcagtgcagcagaattcagaggtaagcgtgtttttagatgctttaatgttttatttaccccccgattttgttttacacacagtgtatcttaaatgtgacttagtgtagtgtttcgaattttgaagcatttaaaactttccagtttggtttagtttgcgctccggtgacgcgcagctaacctcgaggtaatgtcacatgtttaacgttagtctaaatgagcgtttttatggcaaattcaaagcgataaactccaaacgcagtttatagttactgagcaacgttataaaacaatatcatttttatacgctgtataattattgttattattacaaagtgaactgctttcgtttcactgttgttgttgtttttgcttttagacatgtaacttaacgtactccagagacgcactaacttgcacagcattgaatggaaaaggctttgtccatgtaagtttactttacctttaactaAGCTAGCctatctgttaaatcttcttggtgctttggttggtgatattctctttctaatctttttgtttattgattgttaggctatgttgtgatattatattgttatattgatattattattgtgaaatcatgttgtgatgttactttgtgacagtattggggagcaaatattaatgtttaaattacactttgtatagtagcagataagaggtgtaatgggttttaactttctgggttttctggaaggtccagttgagggCATCAAGAACACGCAGATAGCCTATACCTGTGTCTGCCTggacagactgcagttctgctactccacgccaaggcttttgtatggatgcCTGACTACTAcagtgttctctaaaggtattactggagcaaaacaacagcacctgttacagtgaaatttgtattcataaaaatagtgatacatgtgtagcaggtccagtacatgtgatgtcattgagaagttgtttttattaaatgtcattaaaacaaataaataaacatgctatttaaataaatctaaatattaaaaacttgaggattaagaagaaattaaatgcatcatctgtcttgcgaaaagggtctacttaagaattctggtgtttcccaactgaaagggatagttcacccaagaatgaaaatttactcacatttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020483 lncRNA downstream 33102 6533822 ~ 6556501 (-) False XLOC_010425
TCONS_00020482 lncRNA downstream 33102 6533822 ~ 6556501 (-) False XLOC_010425
TCONS_00020481 lncRNA downstream 33102 6533822 ~ 6556501 (-) True XLOC_010425
TCONS_00022099 lncRNA downstream 33486 6533822 ~ 6556117 (-) False XLOC_010425
TCONS_00021782 lncRNA downstream 40292 6512481 ~ 6549311 (-) False XLOC_010425
TCONS_00021783 lncRNA upstream 14514 6605385 ~ 6626166 (-) False XLOC_010427
TCONS_00022101 lncRNA upstream 30078 6620949 ~ 6634979 (-) False XLOC_010427
TCONS_00022102 lncRNA upstream 34977 6625848 ~ 6635296 (-) False XLOC_010427
TCONS_00020488 lncRNA upstream 43235 6634106 ~ 6635296 (-) True XLOC_010427
TCONS_00022103 lncRNA upstream 57159 6648030 ~ 6651719 (-) True XLOC_010428
TCONS_00020478 mRNA downstream 164785 6395311 ~ 6424818 (-) False XLOC_010423
TCONS_00020479 mRNA downstream 164787 6395947 ~ 6424816 (-) True XLOC_010423
TCONS_00020477 mRNA downstream 198328 6386941 ~ 6391275 (-) False XLOC_010422
TCONS_00020476 mRNA downstream 211931 6356460 ~ 6377672 (-) True XLOC_010420
TCONS_00020474 mRNA downstream 383813 6182501 ~ 6205790 (-) False XLOC_010417
TCONS_00020489 mRNA upstream 212599 6803470 ~ 6821927 (-) False XLOC_010429
TCONS_00020490 mRNA upstream 212674 6803545 ~ 6821928 (-) False XLOC_010429
TCONS_00020491 mRNA upstream 229577 6820448 ~ 6849754 (-) False XLOC_010429
TCONS_00020492 mRNA upstream 229577 6820448 ~ 6849781 (-) True XLOC_010429
TCONS_00020494 mRNA upstream 346315 6937186 ~ 6944927 (-) True XLOC_010431
TCONS_00020473 other downstream 718914 5870573 ~ 5870689 (-) True XLOC_010416
TCONS_00020472 other downstream 731622 5821297 ~ 5857981 (-) True XLOC_010415
TCONS_00020459 other downstream 1482186 5107298 ~ 5107417 (-) True XLOC_010405
TCONS_00020457 other downstream 1527974 5061499 ~ 5061629 (-) True XLOC_010404
TCONS_00020450 other downstream 1870218 4712664 ~ 4719385 (-) True XLOC_010400
TCONS_00020493 other upstream 237681 6828552 ~ 6829635 (-) True XLOC_010430
TCONS_00020500 other upstream 629121 7219992 ~ 7228279 (-) True XLOC_010432
TCONS_00020506 other upstream 1103010 7693881 ~ 7696211 (-) False XLOC_010438
TCONS_00020507 other upstream 1103923 7694794 ~ 7696216 (-) True XLOC_010438
TCONS_00020521 other upstream 1696900 8287771 ~ 8288447 (-) True XLOC_010447

Expression Profile

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